RNA id: XR_002651330.1


Basic Information

Item Value
RNA id XR_002651330.1
length 1509
RNA type misc_RNA
GC content 0.48
exon number 12
gene id wdr4
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6339995 ~ 6345403 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTTGTTGCTGCTGATGTATTAAACAGGCGACGGAGGTTCCCACGTGGTTGTGCAGTGATCATGGCAGCGGTGTGCTGTGCTGGAGACTGGCTGCTGACATGCAGCTCTCAGTATTTAGTAGCAGTGAACATCAGGCAAAGCAGGGAACCGTTCGTGTTTGATTGTTCCAAAGCAGAGCAGAAACCAACGGAAACTGAGGCTGAAAATAAAAGTGATGGTGGGGGTTCTGAGGAAAAGGGAAGTGACCTGATCCTTGCCTGCACCATCTCAACATCAGGAAACTACGCTGCCCTGACAGACGACAACAAACGGCTCATTCTGTTCCGCACGCAACCATCCTGGCAGTGCATCAGCACACGGTGGGTGGTGAGAAGATGTACTTCGCTGATGTTCAGTCAGGCAGAGGATGAGCTGTTTGTGGCTGATAAGTCTGGTGATGTCTATTCATTTTCTGTTCTGGAGCCGCAGAAGCAAGGCGAGCTGAAGCTGGGGCATCTCTCCATGCTGCTGGCCATAACTCTGTCTCCTGACGATAAATACATCATCACAGCAGACAGAGATGAGAAGATCAGAGTGAGCCTTCGCCAATCTCCTTACAATATTCAGGCTTTCTGTTTGGGACACACAGAGTTTGTCAGCACATTGTTTGTTCCAACTGGGCATCCTGAATGGCTCTTGTCTGGCTCAGGGGATGGCACATTAAAGCTTTGGCATTACGAGACTGGCCGGCGGTTACAGAGCATTAACATGAAGCAACTCGGCTTTTCTCAGAGCTCTGAAACAGATGCTGAAAAGCCTCAAAGGTTTGCTGTGAGTCGAATCATCAGCTCACCAAATGGACGTCATGTGGCTGTGcagtgtgagagATTTCCCTCTATTCAGCTGTTTGAGGTGAAGGACGGTTCAGAAGAGCTTTTGATCCCCACAGAGAAGCTTATTCTGCCTCACGCTCCCTGGGACATGGCCTTTGACTCTGAAGGTCGACTTTGGGTCTTGCTGCAGAACAAGGATGCAACTGTGCTCCTGTACACATACTCGCAGGACTGCTGGAAGcagatTGATTCAGAAAGTGCAGATCTTCAGAGAGTAGAAGAAGCACTGAGCACCCAGTGGGACTTCTTCAAAGACTCAGTCGGGGTAGAGAGTCGCTTCCAGCACCTCTACAAGGTGAACTTTGACAACATGGCCTCATATTTGCAGAAGAAACAGGAGAGACTGCAGCAGCAGGATCAGAAAGAGGGCAAGAAGAGGACAGGAGGAAATGGCTCTCAGTCCAACGGGGCAGCAAAAAAGAgcaagaatgagagaaagagggaagcaGTGCCTTCAAACTGCAGCTGAGATTTAGAACCCAGGAGAGACTGAAAATGATGTGTTTAGAATTTATTTAATGGTGGACATTCCAGCAGTAGGTTGTCCCTGCATTGACATTCAAATGTGGATTATTTttacaaatgcagaaatatgatatggatttttaaaataaatgtttttgtttcaaGCAATA

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0005634 nucleus cellular_component
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224036 lncRNA upstream 14237 6319319 ~ 6325758 (+) False G165469
TU224037 lncRNA upstream 15946 6319319 ~ 6324049 (+) True G165469
TU224008 lncRNA upstream 92487 6247265 ~ 6247508 (+) True G165450
TU223990 lncRNA upstream 94355 6245251 ~ 6245640 (+) True G165432
TU223976 lncRNA upstream 96080 6243527 ~ 6243915 (+) True G165418
TU224044 lncRNA downstream 2600 6348003 ~ 6348651 (+) True G165474
TU224057 lncRNA downstream 43299 6388702 ~ 6388998 (+) True G165484
XR_002651333.1 lncRNA downstream 55091 6400494 ~ 6408768 (+) False LOC111194884
TU224058 lncRNA downstream 60476 6405879 ~ 6412938 (+) False LOC111194884
TU224059 lncRNA downstream 60476 6405879 ~ 6409605 (+) True LOC111194884
XM_015601225.2 mRNA upstream 32667 6296186 ~ 6307328 (+) True tmprss3
XM_022680652.1 mRNA upstream 46227 6289550 ~ 6293768 (+) True LOC103026554
XM_022680117.1 mRNA upstream 140242 6179955 ~ 6199753 (+) True LOC111194881
XM_022680112.1 mRNA upstream 216944 6117364 ~ 6123051 (+) True LOC107196936
XM_022680135.1 mRNA downstream 283203 6628606 ~ 6733187 (+) False ccdc148
XM_022680137.1 mRNA downstream 283241 6628644 ~ 6733187 (+) False ccdc148
XM_022680136.1 mRNA downstream 284887 6630290 ~ 6733187 (+) True ccdc148
XM_022680141.1 mRNA downstream 415948 6761351 ~ 6832556 (+) True LOC103030586
XM_022680142.1 mRNA downstream 415954 6761357 ~ 6832556 (+) False LOC103030586
TU223975 other upstream 102009 6160400 ~ 6237986 (+) False LOC111194881
TU223959 other upstream 194026 6144937 ~ 6145969 (+) True G165406
TU222840 other upstream 3847004 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 4501908 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 4505361 1822868 ~ 1834634 (+) False LOC103028062
TU224375 other downstream 1039730 7385133 ~ 7429366 (+) False LOC103040759
XR_002651338.1 other downstream 1683992 8029395 ~ 8034584 (+) True LOC111194887
TU224843 other downstream 2692839 9038242 ~ 9078728 (+) False G166015
TU224842 other downstream 2729917 9075320 ~ 9085850 (+) True G166015
TU224855 other downstream 2791558 9136961 ~ 9148559 (+) False LOC103024790

Expression Profile