Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007253224.3 |
| length | 1387 |
| RNA type | mRNA |
| GC content | 0.39 |
| exon number | 6 |
| gene id | LOC103021436 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035915.1 |
| NCBI id | CM008318.1 |
| chromosome length | 35429340 |
| location | 5300599 ~ 5305109 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0006301 | postreplication repair | biological_process |
| GO:0060135 | maternal process involved in female pregnancy | biological_process |
| GO:0033522 | histone H2A ubiquitination | biological_process |
| GO:0009411 | response to UV | biological_process |
| GO:0008284 | positive regulation of cell population proliferation | biological_process |
| GO:0051865 | protein autoubiquitination | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0070936 | protein K48-linked ubiquitination | biological_process |
| GO:0070979 | protein K11-linked ubiquitination | biological_process |
| GO:0002474 | antigen processing and presentation of peptide antigen via MHC class I | biological_process |
| GO:0001701 | in utero embryonic development | biological_process |
| GO:0001741 | XY body | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0033503 | HULC complex | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0031625 | ubiquitin protein ligase binding | molecular_function |
| id | description |
|---|---|
| K10573 | UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU223435 | lncRNA | upstream | 5045 | 5285723 ~ 5295554 (+) | True | LOC103021746 |
| TU223436 | lncRNA | upstream | 5045 | 5285723 ~ 5295554 (+) | False | LOC103021746 |
| TU223426 | lncRNA | upstream | 183484 | 5116915 ~ 5117115 (+) | True | G165034 |
| TU223402 | lncRNA | upstream | 243792 | 5016734 ~ 5056807 (+) | True | G165013 |
| TU223404 | lncRNA | upstream | 274336 | 5025254 ~ 5026263 (+) | True | G165015 |
| TU223448 | lncRNA | downstream | 633 | 5305742 ~ 5306443 (+) | True | G165053 |
| TU223600 | lncRNA | downstream | 27670 | 5332779 ~ 5333119 (+) | True | G165159 |
| TU223621 | lncRNA | downstream | 199632 | 5504741 ~ 5513293 (+) | True | G165176 |
| TU223687 | lncRNA | downstream | 278418 | 5583527 ~ 5585118 (+) | True | G165229 |
| TU223697 | lncRNA | downstream | 306203 | 5611312 ~ 5649236 (+) | True | G165238 |
| XM_007253225.3 | mRNA | upstream | 1871 | 5268039 ~ 5298728 (+) | False | LOC103021746 |
| XM_022680098.1 | mRNA | upstream | 66960 | 5219361 ~ 5233639 (+) | True | LOC111194874 |
| XM_022680651.1 | mRNA | upstream | 286020 | 4996621 ~ 5014579 (+) | True | LOC111194953 |
| XM_022680090.1 | mRNA | upstream | 306403 | 4973645 ~ 4994196 (+) | True | LOC103031000 |
| XM_022680089.1 | mRNA | upstream | 333710 | 4925059 ~ 4966889 (+) | False | stat4 |
| XM_007253221.3 | mRNA | downstream | 118826 | 5423935 ~ 5437232 (+) | True | LOC103047200 |
| XM_022680099.1 | mRNA | downstream | 118826 | 5423935 ~ 5437232 (+) | False | LOC103047200 |
| XM_007253222.3 | mRNA | downstream | 118826 | 5423935 ~ 5437232 (+) | False | LOC103047200 |
| XM_022679998.1 | mRNA | downstream | 323880 | 5628989 ~ 5638938 (+) | True | btla |
| XM_022680107.1 | mRNA | downstream | 496782 | 5801891 ~ 5834662 (+) | True | maats1 |
| TU222840 | other | upstream | 2807608 | 2490044 ~ 2492991 (+) | True | G164539 |
| TU222580 | other | upstream | 3462512 | 1834813 ~ 1838087 (+) | False | LOC103028062 |
| TU222588 | other | upstream | 3465965 | 1822868 ~ 1834634 (+) | False | LOC103028062 |
| TU222476 | other | upstream | 3819865 | 1478706 ~ 1480734 (+) | False | LOC103047444 |
| TU222238 | other | upstream | 4728406 | 538279 ~ 572193 (+) | True | G164126 |
| TU223959 | other | downstream | 839828 | 6144937 ~ 6145969 (+) | True | G165406 |
| TU223975 | other | downstream | 855291 | 6160400 ~ 6237986 (+) | False | LOC111194881 |
| XR_002651330.1 | other | downstream | 1034886 | 6339995 ~ 6345403 (+) | False | wdr4 |
| XR_002651331.1 | other | downstream | 1034886 | 6339995 ~ 6345403 (+) | False | wdr4 |
| TU224375 | other | downstream | 2080024 | 7385133 ~ 7429366 (+) | False | LOC103040759 |
