RNA id: XM_007253245.3


Basic Information

Item Value
RNA id XM_007253245.3
length 1370
RNA type mRNA
GC content 0.43
exon number 4
gene id ormdl1
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4810548 ~ 4817692 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCGTTCCTATTCACCTCCCCTttggacagacacacagagacggGCAGCGGGTTCTGGCCGTTTCGCTGCAGCGGATCAGGGTCGAGGATCTGGTATAAAAGCGGGGACGTCAAGATGAACGTTGGTGTGGCTCACAGTGAGGTGAACCCGAACACTCGGGTTATGAACAGTCGGGGGATCTGGCTAACGTACGCACTAGGTGTGGGAATGCTTCACATTGTGCTGCTGAGCATTCCTTTCTTCAGCGTTCCTGTTGTGTGGACCCTCACAAATGTTATTCACAATTTTGGTATGTACGTGTTCATGCACGCAGTAAAAGGCACACCGTTTGAAACTCCAGACCAGGGGAAAGCCAGATTACTCACACACTGGGAACAGCTGGACTATGGAGTGCAGTTCACATCATCCAGAAAATTCTTCACAATCTCTCCAATCATTTTGTACTTCCTGGCGAGCTTCTACACAAAATACGACACCGCTCATTTTGTGATAAACACAGCCTCCCTCCTCAGTGTGCTCATCCCCAAATTGCCACAGCTCCATGGAGTGCGAATCCTCGGAATCAACAAGTATTAAGCTCACCAATCAGAGGGACCTGTGCTGAGACCGACTCTGCAGTGAGCAGAGTCTCACCTGTTAGGAGAGGAGGGaaccctctgtgtgtgtggtgaggcagttttgtacagtgtgtataattTAGTGTCTGTCTTTGCTTAGATGCACCTGAAGTTATTACAGGCGTATGTGATAATGCCTTGAGCATTACttaagtaaatatttaaattttttttctttcttccctgTCAGTCCTAATGAATCTGGGCTGGCCTAGATTCCCCTTTCTACATATTTGCTTTTGTTTGTAGGTGCTCACTACACTGTGAGAAACTAATGCTTTCTGTTTGTCCCATTTCTAAACACAGTTATAAAAGGCTGTTTTTAAGACCAGTTCTTTGTAAGAACTGGACCGTGTAGCTTattagtttttctttattttctttcctgTATCAATGCtttacaaaacaacaataaagatGTCCTTGCATGATTttctgaagaaaagaaaaaacaaagtttgTTAGATCAAGTATTTTGATAGTGTATATAGTCAGTCATATGGTGGGTTGATGTCTCAGTACCTAAGTGACAGGGAAACATCCATTAACCAGGCTTTAGTGTTTACTTCCACAAGTCAGATATGTTTATATACTCATTCATTACAACAGTGTGCTTGTTTAGGACATAACTGTGAATCTCCTTCATTACCAAGGCAGCTAGTCCTTTTTGGCTTCTGCTTATTTATGGTATTATTGGAGCTCAGAAGATCCCTGTATGTAATATAggtccattaaaaaaacatttgtgctCA

Function

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223323 lncRNA upstream 73838 4698332 ~ 4736710 (+) True G164952
TU223313 lncRNA upstream 159655 4616803 ~ 4650893 (+) True G164944
TU223278 lncRNA upstream 307137 4501948 ~ 4503411 (+) True G164910
TU223263 lncRNA upstream 318839 4449979 ~ 4491709 (+) True G164899
TU223365 lncRNA downstream 76453 4894145 ~ 4896061 (+) True G164990
TU223402 lncRNA downstream 199042 5016734 ~ 5056807 (+) True G165013
TU223404 lncRNA downstream 207562 5025254 ~ 5026263 (+) True G165015
TU223426 lncRNA downstream 299223 5116915 ~ 5117115 (+) True G165034
TU223435 lncRNA downstream 468031 5285723 ~ 5295554 (+) True LOC103021746
XM_007253246.3 mRNA upstream 50234 4756744 ~ 4760314 (+) True mstn
XM_022680077.1 mRNA upstream 76327 4671132 ~ 4734221 (+) False hibch
XM_022680078.1 mRNA upstream 76327 4671147 ~ 4734221 (+) True hibch
XM_007253249.3 mRNA upstream 361928 4379022 ~ 4448620 (+) True vwc2l
XM_007253262.3 mRNA upstream 766955 4039986 ~ 4043593 (+) True LOC103033219
XM_007253242.3 mRNA downstream 4611 4822303 ~ 4827751 (+) True osgepl1
XM_007253240.3 mRNA downstream 36711 4854403 ~ 4859014 (+) True LOC103025618
XM_007253239.3 mRNA downstream 55233 4872925 ~ 4887416 (+) True slc40a1
XM_022680086.1 mRNA downstream 107366 4925058 ~ 4967478 (+) False stat4
XM_022680083.1 mRNA downstream 107366 4925058 ~ 4966889 (+) True stat4
TU222840 other upstream 2317557 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 2972461 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 2975914 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 3329814 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 4238355 538279 ~ 572193 (+) True G164126
TU223959 other downstream 1327245 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 1342708 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 1522303 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 1522303 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 2567441 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile