RNA id: XM_007253246.3


Basic Information

Item Value
RNA id XM_007253246.3
length 2546
RNA type mRNA
GC content 0.50
exon number 3
gene id mstn
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4756744 ~ 4760314 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGGACTCCAGCACCGTGGGTTGCAGTATAAAAATGCCTGGCGGGTTTAAAGCATGCCACCTACCTGCTGGTGCCCTGGTGCATGGCGCACTGCGCGTTCGCGactaaaaagagcaaaaaaaggaaaaaagcaaGCAGCCGTGAATCCCCCCTCCGCGCCTCGGACCATGCATCTCGCGCAGGTTTTGATCGCTCTCAGCTTCGTGCTCGCGCTCGGTCCAACGGTGGACAGTGAGCTCGCGGGAGCGCAGCCGcagccacagcagcagcagccgcagcaacaacagcagcagcagcagcagcagccggcAGCCGCGCGCACCGAGGAGGAGAGCGAGGCGCACTGCTCCACGTGCGAGTTCAGGCAGCACAGCAAAATGATGCGCCTCCACGCCATCAAGTCCCAGATCCTGAGCAAGCTGCGCCTCAAACAGGCTCCCAACATCAGCCGGGACGTGGTGAAGCAGCTGCTGCCCAAAGCGCCGCCGCTGCAGCAGCTGCTGGACCAGTACGACGTGCTGGGGGACGACTGCAAGGACGGGGTGATCGAGGACGGGGACGACGACGACCACGCCACGACGGAGACTGTCATGACCATGGCTTCGGAGCCTGACCCCATCGTCCAGGTAGATCGCAAACCCAAATGCTGCTTCTTCTCCTTCAGTCCAAAGATCCAAACGAATCGCATCGTGAGGGCACAGCTGTGGGTGCATCTGCGAGCCGTGGAGGAAGCTACCACCGTCTTCCTGCAGATCTCCCGCCTGATGCCCGTTACAGATGGAAGGAGGCAAATAAGAATAAGGTCGCTGAAGATCGATGTGAAAGCCGGGGTCACGTCTTGGCAGAGCATCGATGTAAAGCAGGTGCTCACCGTGTGGCTGAGGCAGCCGGAGACAAACTGGGGGATAGAGATAAATGCCTACGACGCTAAAGGAAACGACTTGGCTGTCACCTCGCCAGATGTGGGCGACGAGGGACTGCTCCCCTTCATGGAGGTGAAAATCTCAGAGGGTCCCAAGCGCTCCAGGAGAGATTCGGGACTGGACTGTGACGAGAACTCGTCCGAGTCGCGCTGTTGTCGGTACCCCCTCACGGTGGACTTTGAAGACTTTGGCTGGGACTGGATTATTGCCCCGAAACGCTACAAAGCCAATTACTGCTCGGGGGAGTGTGATTACATGCACCTGCAGAAGTACCCACACACCCACCTGGTGAACAAGGCCAACCCCCGTGGCACAGCCGGCCCATGCTGCACCCCCACCAAGATGTCGCCCATCAACATGCTTTACTTCAACGGCAAAGAGCAGATCATCTACGGCAAGCTCCCCTCCATGGTGGTGGACCGCTGCGGCTGCTCGTGAGGCCTTCCCCGAGGCAGGAGGACTCACTCGCTCCGTCTCAAAGCCCCCCTCTTCCCACCGGATCTCCCACAACCACAACACCCGTTGACCATTATCATCAGAGCTTTCTGCAGAAACAGATAAACACTGTGCAATAGAACCAGAATAGCAGCAAGGATGCTCATCCGTTCACCGAGCACCGCTTCACTCTCACCTCTCTGACTCGTTTTTCTTCATTATCCTAAATCTTTACGGCTCGGCCACAGCGGCCAGAGGTCACGTGGATATACACAAGGAGGAATGTCATGCTGGTTGGACTTGGGAAAGGACATCAAGCTTAAAAATTACAGCATTCTCTCATAACATCTTGTTCAATGTTATGATTTaaactgtctgtctctctctctctctctctctctctctctctttctctgtgtctctctctttgtcaaAACAGTCATCAACGCATATATAGGACAAACTCACACCTGGCACAAACATTGTATTACAGTAACATTTACAGTAACCTTCTCCACAACATCCATTCATTTAGTTCTCTTCTTGCTGCAACAGCTGTGCAACAGTATCAGTGAGCTTGTTTAAGTAAGGAATCCAAGAGCAACAGAGAGGGACTCAAGgacacttaaaacaaaaaaaaaaataaaaaaagaaacaaaagaagagGAAGCTTGAAAAAACCTGTCAGAAGAAACCAGTCTTTGTCTACAGTCAaaaccagaacacacacactgcacaatcTGATCTAATCGTTTAAATGTAGCTCTCTTTCCATTACTCAACTGTTCGAACTGCCCTATACACTTGAACTGTTATGAAAATCAGTATTACTGGACAGGAGGACTTGAACCAGTGGCACTTTGAATGCAGTCTATACATTGAAATGTGTTAAAGACAGAGAACTATTGAAAATAAGTATGAATGTTAATACCGCGTCACTTAACTCTGTCTTCAAACTACACAGTTTGCACTATGGCAGACCAATAGAAAGAATtggttgctaaaaaaaaatgttgtaaaaactGATTTTGATATGTTTGCTAATTGCATTGTATACTTGCCATTGTTTCCATTAACAGTTGCCTTTTTTAACCTCTGTTAGTTTGTGTATAAGACAGCACATTAGTGACAAATGTACAATATCAAATCTATGTATctgttaaaacaaataaaggtgcTTGCTTTATA

Function

GO: NA

KEGG:

id description
K05497 MSTN, GDF8; growth differentiation factor 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223323 lncRNA upstream 20034 4698332 ~ 4736710 (+) True G164952
TU223313 lncRNA upstream 105851 4616803 ~ 4650893 (+) True G164944
TU223278 lncRNA upstream 253333 4501948 ~ 4503411 (+) True G164910
TU223263 lncRNA upstream 265035 4449979 ~ 4491709 (+) True G164899
TU223274 lncRNA upstream 301929 4452048 ~ 4454815 (+) True G164907
TU223365 lncRNA downstream 133831 4894145 ~ 4896061 (+) True G164990
TU223402 lncRNA downstream 256420 5016734 ~ 5056807 (+) True G165013
TU223404 lncRNA downstream 264940 5025254 ~ 5026263 (+) True G165015
TU223426 lncRNA downstream 356601 5116915 ~ 5117115 (+) True G165034
TU223435 lncRNA downstream 525409 5285723 ~ 5295554 (+) True LOC103021746
XM_022680077.1 mRNA upstream 22523 4671132 ~ 4734221 (+) False hibch
XM_022680078.1 mRNA upstream 22523 4671147 ~ 4734221 (+) True hibch
XM_007253249.3 mRNA upstream 308124 4379022 ~ 4448620 (+) True vwc2l
XM_007253262.3 mRNA upstream 713151 4039986 ~ 4043593 (+) True LOC103033219
XM_022680069.1 mRNA upstream 1744854 2912007 ~ 3011890 (+) True cps1
XM_007253245.3 mRNA downstream 50234 4810548 ~ 4817692 (+) False ormdl1
XM_007253244.3 mRNA downstream 52388 4812702 ~ 4817692 (+) True ormdl1
XM_007253242.3 mRNA downstream 61989 4822303 ~ 4827751 (+) True osgepl1
XM_007253240.3 mRNA downstream 94089 4854403 ~ 4859014 (+) True LOC103025618
XM_007253239.3 mRNA downstream 112611 4872925 ~ 4887416 (+) True slc40a1
TU222840 other upstream 2263753 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 2918657 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 2922110 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 3276010 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 4184551 538279 ~ 572193 (+) True G164126
TU223959 other downstream 1384623 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 1400086 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 1579681 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 1579681 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 2624819 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile