RNA id: XM_007253249.3


Basic Information

Item Value
RNA id XM_007253249.3
length 2137
RNA type mRNA
GC content 0.50
exon number 4
gene id vwc2l
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4379022 ~ 4448620 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagcagcagcagcagcagccgcgtCTCCGCCGTAGCTCAACTTCTCCTCGCGTTACAAGGTGGAAAACGTAATGACTTTGGCTCGAGCGTCGCGCGCTTTCGCGGCCGGTGCGTCGGGGATCTTTAATCTGGCTTCTCAGATGGTTGGATATAAGACCTAATGGCGTTTCCTCGCGCACCTTGCAGCATTTGGAAGTTGATTGAAATTCCACTCATCGCTGCAGATGACTAGGTAATCAGCCGGCACCAGAGGGGGAAGTATAATCATTTCTGtgggttttctttttctttttttttcttttttttggggggggtggTCCTTTTTATTCTTTGTCTCTTTCCTCTTTCGtgccttttttttgttgttgttgttgcacaGCTGCACGAGCGGATGAGCGGTCACTTAACTCAGATGACCGGGAAAGGATAAACATGTTGGCGTCCGACACATTTCTGCTCATCTCTGACATTTCTGGATATTTCGTCGCCTTCAAGTCGGCTTCAGAACATCGAGAGGCATCGAGGGGCATGATGATGAGAGATCCTTTGTAAACatctaaaaagaaaagaaaaaatttaTTGAAGATGTATTGGGATGTATTGGTTCTCTGTTCTGCTCGACTGGAGTAAGCTGTTCTTTTCCCTTTTCGCCTTTTGTCACCTGCTGTTCAGAATCGGAGTTGGGATTGTTTTTCCTTTCGTTATatttttcttccttccttcgTTCATCGTCAACGAGGTGCTCGTTTAGGAGCTcgttatctctttttttttctacctcTCATTTGCAAACAAAGTGGAAGCAGACGTTTCATCACGGACAGCCACGGCGAAGGATGGGCCCTCTCTTCCCTGCTGCCTGCATCGTGCTGCTGGCCGTGAACGCCGCTGTGCTGCAGGCCGAGGACTACCCCGCGGACGAGGCCGAGGCCGAGCGGGGGACCACCAACGACATACTCTTCGATGATTACAGGGGCAAAGGCTGCGTGGATGACAGCGGCTTCGTCTACAAGCTCGGCGAGCGCTTCTTCCCCGGCCACTCGAACTGCCCGTGCGTGTGCACGGAGGACGGGCCGGTGTGCGAGCAGCCCGAGTGCCCCAAAATACACCCCAAGTGCACCAAGGTGGAGCACAATGGCTGCTGCCCGGAGTGCAAGGAGGTCAAGAACTTTTGTGAATACAGAGGGAAGACGTACAAAATCCTGGAGGAGTTCAAGCCTTCGCCCTGTGAGTGGTGTCGCTGTGAGCCCAACAGCGAGGTGCACTGTGTGGTGGCTGACTGTGCAGTCCCGGAGTGCGTCAACCCAGTGTACGAGCCAGAACAATGCTGTCCCATATGTAAAAACGGTCCGAACTGCTACGCCGGAACGACGATCATTCCAGCCGGCATAGAAGTGAAGGTGGACGACTGCACCATCTGCCGCTGCCACAACGGAGACTGGTGGAAGCCGGCACAGTGCTTGCGGCGAGAGTGCCTCAACGGCCAGCCGTCGTCGTAAACACCCCCTCCGGAGCGGGGAGGAGGAGGGGCACACGAGTGACAGCGCCGCCCGGCACCGGGGCGGCACATCTAGGGACACTGGAGGATGGACTGGCAGGAGCACAATATGCCTGGCAAAACTGAGGCTGCTGAGCGAGCTGAGACACACTGAGATAATtcatacatacacaaatacacaatacaaacaCACTCCAGACCTTGGCAACGTGTCAGATGAGTAAAGGAAAGGAAACATCAGAAGacactgtttgtttttgtttgtttgtttctataaTGGTTCCATCCCACTTTGATTTCTTGCTAACGCTGCTGAACCTCACAAGTTTATACGCTCTCGTGACtcagagagggaggaagagctGCTTCGAATTGAAGATATTTGTCAGAGAGATCatctgtgtgttgtttttggcgGTTTACAGCCGCATTCACAAACCTGGGAGGCTCCTCGtgtagggatttttttttagctcatgCTATTACatccagaaaatgaaaaaaaaaaaaaagaactacgATTTGCGGTTAAATTGTTTTTGAGGGAGGAAAGCAGGATGGCTCCAAATGAAACTTTTTGGCagattaaaaactaaaaccctaaaaaaaaaaaaaaaaaaaaatacccagatATTTTTA

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0005576 extracellular region cellular_component
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component

KEGG:

id description
K24521 VWC2; brorin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223257 lncRNA upstream 30367 4348249 ~ 4348655 (+) True G164893
TU223252 lncRNA upstream 88458 4290316 ~ 4290564 (+) True G164888
TU223197 lncRNA upstream 369002 3967496 ~ 4010020 (+) True G164845
TU223196 lncRNA upstream 369002 3973947 ~ 4010020 (+) False G164845
TU223065 lncRNA upstream 576423 3800336 ~ 3802599 (+) True G164725
TU223263 lncRNA downstream 1359 4449979 ~ 4491709 (+) True G164899
TU223274 lncRNA downstream 3428 4452048 ~ 4454815 (+) True G164907
TU223278 lncRNA downstream 53328 4501948 ~ 4503411 (+) True G164910
TU223313 lncRNA downstream 168183 4616803 ~ 4650893 (+) True G164944
TU223323 lncRNA downstream 249712 4698332 ~ 4736710 (+) True G164952
XM_007253262.3 mRNA upstream 335429 4039986 ~ 4043593 (+) True LOC103033219
XM_022680069.1 mRNA upstream 1367132 2912007 ~ 3011890 (+) True cps1
XM_022680068.1 mRNA upstream 1503956 2660455 ~ 2875066 (+) True map2
XM_022680066.1 mRNA upstream 1723308 2604058 ~ 2655714 (+) True kansl1l
XM_022680063.1 mRNA upstream 1905125 2440656 ~ 2473897 (+) True LOC103024889
XM_022680077.1 mRNA downstream 222512 4671132 ~ 4734221 (+) False hibch
XM_022680078.1 mRNA downstream 222527 4671147 ~ 4734221 (+) True hibch
XM_007253246.3 mRNA downstream 308124 4756744 ~ 4760314 (+) True mstn
XM_007253245.3 mRNA downstream 361928 4810548 ~ 4817692 (+) False ormdl1
XM_007253244.3 mRNA downstream 364082 4812702 ~ 4817692 (+) True ormdl1
TU222840 other upstream 1886031 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 2540935 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 2544388 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 2898288 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 3806829 538279 ~ 572193 (+) True G164126
TU223959 other downstream 1696317 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 1711780 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 1891375 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 1891375 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 2936513 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile