RNA id: XM_015601225.2


Basic Information

Item Value
RNA id XM_015601225.2
length 2117
RNA type mRNA
GC content 0.50
exon number 13
gene id tmprss3
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6296186 ~ 6307328 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACTTCTGGGTAAGTAAGGGATACATTGTAGAATCAGAATGTTAACCCATGTGACTCCAggattacatttatatattcattttaggATATAATAGTTGATTGCATAGTATTTATCATGAAGCAAATATGTAGTCTAAGTTGCTTCATTCTATGGATTCTGTTTAAATGTAGCCTAGGAGTATTTTAGAGCTCTGAaggattattattatgtaatgaAATGGAAAAAGGCAGACTTGCTGGGTTAGTCTAAAGTTACAGAAGTGAAGAGTTCAATCCTGGATCTACAGGTTATTTCTGTTCTCTTCTCACACTTATTACACTCATTAATCttacttttattcttttctctGCTTGAGAACGTGTAGGAACAATGTCTGTGTGAAGGTGGCTATGGCTAATCCTGATGGGCAGGAGGCTGAAGTGGGCGTACCCGCTGAAGCTGGGCTAATGAATGGAGTTTTGGAGGCTCCAGCAGGTGGAGAAGAGAACATTGCCACACAAATACAGGCTGGAGGGACAGAACAGACGTGTCCTTCCAGAATAGAGGTGCTCTCTGTTGGAGATGAGGACCATCCAGCCCTTGACACACCTTCCACCCTCAATGTTAACACCCTGGAGAGCCACAATGGCAGCCTGGCAGGAGAAAACAGCACCAATAAACCTGCCGCTCAGACCACCGAAAGCACAGAGTGTCAGCCCGATGCCCTCAATAATATCCAGACTCAACCCTCTCCAGCAATGCCTGTTACCAAAGTCCAGCCTTTTCTCTCAGCTgatctggtggaggagaagactCTGCGAGGCCGCTTGTTTGCGAGAAGGATGGAGCTGTTAATCGGCGCCTGTGCTTCACTCGGGGTCATCCTCGTGCTGGGTATCGGGCTGGGAGTGGGTCTGAGCTGTGTGGGGAAGTTCCGCTGCAGCTCCTCTCGCTGTATCAGCAGCACTGCTCAGTGTGATGGACATGTGGACTGTGAGCACGGCGAGGATGAGCTTAGTTGTGtgcgTGTGAGTGGGAAGAGCTCGGTGCTGCAGGTGCTGAGTGAGGGAGTGTGGAGCACAGTGTGTTCAGAGGACTGGGATCCTGAACTGGGATTCTCTGCCTGTAAACAGCTGGGATACTCCAGCTACGTGAGGTCTGGATCTCTCCTGCTCTCCAACATTGAACAAGAATATCAGAATAGTCTTGTGTCAATCAACTTGAGCCAGCCAGGTCCACTGCAGGCCATCAAAATACACAACTCAACCAATCTCAGTAGGACAGAGTGCAGCTCAGGAAAGGTGATAACTCTGAAGTGTTTGGAGTGCGGTTCCAGGCCTCAGTTCAGCACACGTATTGTTGGGGGTAACCTGTCCCTAGAGGGTCAGTTTCCCTGGCAGGTGAGCCTGCAATTCCAGAATGAGCACCTGTGTGGCGGCTCTATTGTAGCAACACGCTGGATACTGACGGCTGCACACTGTGTTTATGGTTTTGCATTCCCCCAGGTGTGGACGGTTCTTGTTGGACTGACCGAGCAGCCGGTTAGTGTTAGTGGAGCAAAGTATCTCTCTGTGGAGAAGATTATTTATCACGCCCGCTATCGGCCCAAAGGCCTGGATTACGATATTGCTTTGCTTAAACTGGTGGAGCCACTTGCATTCAATGGCCTTGTTGAGCCCATCTGTCTGCCCAACTTTGGAGAAGAATTTGAGGATGGGAAAATGTGCTGGATTTCCGGCTGGGGGGCGActgaggatggggGTGAAGCCAGTGTGTCACTGCACTCTGCGAGGGTGCCGCTTATCTCCGCCAAAGCCTGCAGTCAGCCTGAAGTCTACCAGGGCTACATCTCCCCCGGCATGATCTGCGCAGGATACCTGGAGGGAGGAACCGACTCCTGCCAGGGGGACAGCGGTGGTCCACTGGCCTGTGAAGACTCCTCTGTGTGGAAGCTGGTGGGGGCCACAAGCTGGGGTCAAGGCTGCGCTGAAAGAAACAAACCTGGGGTGTACACACGCATCACACAGGCCCTCACCTGGATCCACCAGCAAATGgagAGAGAAGAAACCCTGAATCCTTCTCCTGTCAGCTCGGACAACATGAACAACAGGCAGGACTAAATGCAAagaactgaaaa

Function

GO: NA

KEGG:

id description
K09634 TMPRSS3; transmembrane protease serine 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224008 lncRNA upstream 48678 6247265 ~ 6247508 (+) True G165450
TU223990 lncRNA upstream 50546 6245251 ~ 6245640 (+) True G165432
TU223976 lncRNA upstream 52271 6243527 ~ 6243915 (+) True G165418
XR_002651309.1 lncRNA upstream 52970 6241844 ~ 6243216 (+) True LOC111188246
TU223984 lncRNA upstream 103770 6190802 ~ 6192416 (+) True G165426
TU224036 lncRNA downstream 11991 6319319 ~ 6325758 (+) False G165469
TU224037 lncRNA downstream 11991 6319319 ~ 6324049 (+) True G165469
TU224044 lncRNA downstream 40675 6348003 ~ 6348651 (+) True G165474
TU224057 lncRNA downstream 81374 6388702 ~ 6388998 (+) True G165484
XR_002651333.1 lncRNA downstream 93166 6400494 ~ 6408768 (+) False LOC111194884
XM_022680652.1 mRNA upstream 2418 6289550 ~ 6293768 (+) True LOC103026554
XM_022680117.1 mRNA upstream 96433 6179955 ~ 6199753 (+) True LOC111194881
XM_022680114.1 mRNA upstream 173135 6117364 ~ 6123051 (+) False LOC107196936
XM_007241745.3 mRNA downstream 32667 6339995 ~ 6345403 (+) True wdr4
XM_007241746.3 mRNA downstream 32667 6339995 ~ 6345403 (+) False wdr4
XM_022680135.1 mRNA downstream 321278 6628606 ~ 6733187 (+) False ccdc148
XM_022680137.1 mRNA downstream 321316 6628644 ~ 6733187 (+) False ccdc148
XM_022680136.1 mRNA downstream 322962 6630290 ~ 6733187 (+) True ccdc148
TU223975 other upstream 58200 6160400 ~ 6237986 (+) False LOC111194881
TU223959 other upstream 150217 6144937 ~ 6145969 (+) True G165406
TU222840 other upstream 3803195 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 4458099 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 4461552 1822868 ~ 1834634 (+) False LOC103028062
XR_002651330.1 other downstream 32667 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 32667 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 1077805 7385133 ~ 7429366 (+) False LOC103040759
XR_002651338.1 other downstream 1722067 8029395 ~ 8034584 (+) True LOC111194887
TU224843 other downstream 2730914 9038242 ~ 9078728 (+) False G166015

Expression Profile