RNA id: XM_022679996.1


Basic Information

Item Value
RNA id XM_022679996.1
length 995
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC111194854
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 1880148 ~ 1882693 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTGTTCCGGACGCTGGTGTATTCACTGCTGTAGAGTTGGTGTAGAATGGCTGAGGGCGGTCTCTCAGTGGACCAGTTCAGCTGTCCAGTATGTCTGGACCTCCTGAAGGAACCAGTGGCCATTCCATGTGGACACAGCTTCTGTAAGGTGTGTATTAATGACTGCTGGGATCAGGAGGATCTGAAGGGTGTGTACAGCTGCCCTCAGTGCAGACGCTCCTTCAGACCGAGGCCTGTGGTGGGTAAGAACACCATGCTGGCTGAAGTGGTGGAGAAGCTGAGGAAAACTGAGCTCCAGGATGCTGGTCCTGCTCCTTGTCCTGCTGGACCCGGAGACGTGGAGTGTGATTTCTGCACTGGGAGAAAACTTGCAGCCGTGAAGTCCTGCCTGGTGTGTCTGGTCTCTTTCTGTGAGAATCACCTCCAGCCTCATTATACAGTTCCTGCCCTGAAGAATCACAAGTTGATCAAAGCCTCCAGATACCTGCAGGAGCAGATCTGCTCTCAACATGATAAACGCCTGGAGGTTTACTGTCGCACTGATCAGCAGTGTATCTGCATGCTGTGCACCATGGATCAACATAAAGGACACGATACAGTATCCGCTACAGCTGAAAGAGCTGAGCAGCAGAAGCTGTTGCTGAACACAAAGGAGGAAAACCAGCGAAAAAtccaggagaaagagaaagagcttAACAAGCTGAGAAATGCAGAGGAGTCTCACAAGCGCTCTGCTCAGGCAGCAGTGAGGGACACTGAGAAGATCTTTACAGAGCTGATCCGCTGTATTGAGATGAAACGCTCGGAGGTCTCAGAGCTGATCAGAGATCAGGAGAAAGCTGCAGTGAGTCGAGCTGAAGGAGTCCAGaagcagctggaggaggagatCGCTGAACTAAGGAGGAGAAACACTGAGCTGGAGGAGCTTTCACACACCGAGGACCACATCCATTTCCTTCAGGTACTAGAACCCTTTTAATTCAATCACTTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222597 lncRNA upstream 3063 1876444 ~ 1877085 (+) True G164400
TU222579 lncRNA upstream 42061 1802787 ~ 1838087 (+) True LOC103028062
TU222581 lncRNA upstream 42061 1802787 ~ 1838087 (+) False LOC103028062
TU222569 lncRNA upstream 119594 1759931 ~ 1760554 (+) False tspear
TU222562 lncRNA upstream 171507 1706881 ~ 1708641 (+) True G164376
TU222607 lncRNA downstream 20373 1903066 ~ 1906873 (+) True G164404
TU222720 lncRNA downstream 233150 2115843 ~ 2118502 (+) True G164475
TU222725 lncRNA downstream 296409 2179102 ~ 2180592 (+) True G164479
TU222695 lncRNA downstream 310122 2192815 ~ 2193188 (+) True G164467
TU222750 lncRNA downstream 344853 2227546 ~ 2227792 (+) True G164498
XM_022680053.1 mRNA upstream 1293 1870486 ~ 1878855 (+) True nup35
XM_022680650.1 mRNA upstream 43395 1822838 ~ 1836753 (+) False LOC103028062
XM_022680052.1 mRNA upstream 57928 1806395 ~ 1822220 (+) True ehhadh
XM_022680049.1 mRNA upstream 83401 1783878 ~ 1796747 (+) False LOC103028997
XM_022680047.1 mRNA upstream 83401 1783880 ~ 1796747 (+) True LOC103028997
XM_007233764.3 mRNA downstream 210656 2093349 ~ 2191914 (+) True znf804a
XM_022680063.1 mRNA downstream 557963 2440656 ~ 2473897 (+) True LOC103024889
XM_022680066.1 mRNA downstream 721365 2604058 ~ 2655714 (+) True kansl1l
XM_022680068.1 mRNA downstream 777762 2660455 ~ 2875066 (+) True map2
XM_022680069.1 mRNA downstream 1029314 2912007 ~ 3011890 (+) True cps1
TU222580 other upstream 42061 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 45514 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 399414 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1307955 538279 ~ 572193 (+) True G164126
TU222840 other downstream 607351 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 4262244 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 4277707 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 4457302 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 4457302 6339995 ~ 6345403 (+) False wdr4

Expression Profile