RNA id: XM_022680018.1


Basic Information

Item Value
RNA id XM_022680018.1
length 2226
RNA type mRNA
GC content 0.46
exon number 11
gene id cers6
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 105214 ~ 157054 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaatttaaaataaaatatttgcacacaaaaaaataacaatataaccGCATTCATCCGGCAGTGACAGGCTAAATACAGATATGGAAACTGTAGcacatttccacatttccaTCCGTGTGTGTTTTGAGGGGATGATAGAGCGACAGGTGAATCCACCAATCAGCAGCGCCGGCTCGAATTGCGTCACTCCACGTTGGAGGATTCGAGAGAGCGAAAACTACGAAGGGGGCGGGgcggaaaaaaaaactgatgccatcatcatcaccatcatcctcctcctcctccaggaGCTGCAAAGATCAATCGTGAAAGGCGATTGTACCGAGCCTCGGCCATTCAGTGCAGCTGATCCAAGACCCGAGGAGCGGCGTGAAGAGATCCAGGTTCCGGGAGTTCTGCGGCGATGGCGGGGATACTGGCGTGGTTCTGGAACGAGAGATTCTGGCTTCCTCACAATGTAACCTGGGCTGACTTAAAAAACACGGATGAGTCAACCTTCCCGCAAGCGGAGGATCTGTACATGGCATGTCCTTTAGCCTTCTGCGTCTTCATGGTCCGGATCGTGTTCGAGAGGTTCATTGCAAGACCTTGTGCTCTGGCACTGAAAATACAAGCGAATGGGCCTCAGAAGGCTCAACACAATGCCATCCTGGAGAAGGTCTTCACTGCTATCACCAAGCATCCTGATGAGAAGAGGTTAGAGGGCCTGTCTAAGCAGCTGGATTGGGACGTGAGGACGATCCAGCGCTGGTTTCGACAGAGACGCAACCAGGAGAAACCCAGCACACTGACCCGGTTCTGCGAGAGCATGTGGAGGTTTACCTTCTATCTGTACATATTTACCTATGGAGTGCGGTATCTTAAAAAGaCTCAGTGGCTGTGGAACACTAGAGAATGCTGGTACAACTACCCATATCAGGCTCTAACGGTGGACCTGCACTACTACTACATCCTGGAATTATCTTTCTATCTGTCGCTGCTGTTCTCCCAGTTTACAGATATCAGGAGGAAGGACTTTCTGCTGATGTTCATGCACCACCTTGCCACCATCTCCCTGATCACTTTCTCTTATGTAAATAACATGGCTCGAGTGGGAACACTTGTCATGTGTCTTCACGATGCTGCAGATGTGCTGCTGGAGGCAGCCAAAATGGCAAACTATGCCAAGAGCCAGAGGCTTTGCAACGTCCTGTTCATCATGTTCGCCCTGGTTTTCATCAGCTCCAGGCTGGGCATATATCCTGTATGGGTTCTGAACAGCACTCTGTTTGAAAGCTGGGAGATTGTGGGGCCGTATCCATCCTGGTGGGTGTTTAAtgcgctgctggtgctgctTCAGGGACTGCACACTTTCTGGTCCTATCTCATAGTGAAGATAGCCTGCAGAGCCATCTCTAGAGGCAAGGCGGGAAAATTGAATCCTTTACATGTATCAAAGGATGCGCGAAGTGACATAGAGTCGAGCTCTGATGAAGAGGAAGTCTCGCCTCCGACCCAGAAACACCACACTAACGGGACCAACGGGGCCCACGGCACTAACGGCTACCTGTCCGCCTCCCACTGTCATTATGAACACTAAGCATCCTGCCGCCCTTAGACGCTCCAGAGGAGCCCACTGCAGCCTGGTTCATTGGTCTGTACAATACTTGTGCGTGTCAAAACATGAACAATGTTGCCTGTCTGGTACTGGAAGTTCTTAAATAGAATAATGTGAATGCAGTTCTGTTTTGGTATGATTCTTTCCACACCTTTTATTTCTCACagcgttttttttctcttcactaTCTTACATTTATAGGCACTCGGTTGAATATCAGAGCTTTCCCCCCTCCCTTAGCTACAGCTAgctcttgttttttgttgtttctttgtttttttgtgaatgaaTGAAAGCATTTCTCTTATCATCATGCTAGCATGCTGCTGTGGTCATGTAGTTTGGTATTATGGGAGCGGCAGTTTTCTCGAGGAAACgtctttgtatttatttattttttatatctatatataggTTGCAGATTTGTGGATgagatctttctttttttttttcaaagtcttAAAGCAATCTACTGTCAATGTTTGGAAATGGCACGACTATTTAAAATTCAGTCACTGTTTCAGGATTCACCAAATATACAACTTTGACCCTGTTTTTACCTGGTAACGTCATGAGATTataggattatatctggataagaACAAGAGACATATTTGAGCTAgggcag

Function

GO: NA

KEGG:

id description
K23727 CERS5_6, LASS5_6; sphingoid base N-palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222223 lncRNA downstream 328880 485934 ~ 486739 (+) True G164118
TU222233 lncRNA downstream 350791 507845 ~ 520172 (+) True G164123
TU222322 lncRNA downstream 545227 702281 ~ 716718 (+) True G164194
TU222402 lncRNA downstream 682827 839881 ~ 845477 (+) True G164253
TU222426 lncRNA downstream 787543 944597 ~ 944874 (+) True G164276
XM_022680019.1 mRNA downstream 3705 160759 ~ 173503 (+) False nostrin
XM_022680020.1 mRNA downstream 3876 160930 ~ 173503 (+) False nostrin
XM_022680021.1 mRNA downstream 27394 184448 ~ 366848 (+) True tanc1
XM_007230403.3 mRNA downstream 456036 613090 ~ 626626 (+) True tank
XM_007230408.3 mRNA downstream 503547 660601 ~ 666804 (+) True tbr1
TU222238 other downstream 381225 538279 ~ 572193 (+) True G164126
TU222476 other downstream 1321652 1478706 ~ 1480734 (+) False LOC103047444
TU222588 other downstream 1665814 1822868 ~ 1834634 (+) False LOC103028062
TU222580 other downstream 1677759 1834813 ~ 1838087 (+) False LOC103028062
TU222840 other downstream 2332990 2490044 ~ 2492991 (+) True G164539

Expression Profile