RNA id: XM_022680049.1


Basic Information

Item Value
RNA id XM_022680049.1
length 2080
RNA type mRNA
GC content 0.54
exon number 12
gene id LOC103028997
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 1783878 ~ 1796747 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGATCGATGTAGGTGATTGATAATAGGTTTGGGTTTGGATTTGAGCTCGTGCTGTGTTGTGGGTGAAGCGCGCACGGGCtgcaggcagtgtgtgtgtgtgttcgttcaCTCCGCGCGCGACCTGTCGGGGTGCGCGCGCCGGGCTGCTGTTATTTTCCAGCGATTTTTTTGTTCTGATTTTATCGGGAAGCAGCGCGCGCTGGGATCCCGCTGAACTGCATACCCTCGCGACCCCCGGGGGCCCCGGGGGGCTTTATACGAGGAGCCTTTCTGCGGAGTGGTGGGGGTCCCGAGCACAGCGCTCGCAAACaggGAATGAAGTGATACTAGTGTGGTAGTGAATGTTACACACTCTACGCAGAAGGAGGCTAAAGTAGTGGTGGAGAAGTTAGAAGTCAGGGCACCAGTGTAAGGATTGCTCCGTCAGAGTCCGCTACATACTGCATATGGACCCCGACACCCCACAGCCCTCACGCAGTGGCCGGGACCCTCGCCTGCCCGGCCCCTCGGGAGAGCTCTCAGGTTTCCGGAACAAACCTCCAGACTTCCCCCTGCGCATGCTGGTGCCCAGCCAGTTCATAGGAGCCATCATCGGCAAGGAGGGGCTGACCATCAAAAACCTCACCAAGCAAACACAGGCCAAggtGGATATCCACCGTAAGGAGAATGCAGGAGCAGCAGAGAAGCCCATCACCATCCACTCCACCCCGGAGGGCTGCTCCGCCGCCTGCCGCATGATCCTCCAGATCATGCAGAAAGAAGCCAACGACACCAAGGTtacagTAGAGATCCCTCTGAAGATTCTGGCTCATAACAGTCTGGTGGGTCGGCTGATCGGGAAGGAGGGGAGGAACCTGAAGAGGATCGAGGAGGAAAGCGGGACCAAGATCAACATTTCATcgctgcaGGACGTGAGTGTGTATATCGCGGACAGGACGATCACGGTGAAGGGCAGTGTTGATGCGTGCTGTAGAGCTGAGGAGGAGATCATGAAGAAACTGAGGGAAGCGTACGACAATGACACCTCTGCTGTTAATCACCATACAGGTCTAATCCATGGAATGAACCTCAACACTTTGGGCATCTTCTCCTCAGGGCTCTCCATGCTTCCCTCAAACTCCTCCCCATACAGGACccccaacacaccacacactgcctACAGCCCCATAAtggcTGCTGAGCAGGAGGTGGTCTACCTCTTCATCCCCACCCAGGCTGTGGGGGCTCTGATTGGGAAAAAGGGACAGCATATTAAACAGCTCGCACAATACGCTGGAGCATCTATTAAGATCGCTCCTGCAGAGAATCCAGATGTTACAGAAAGAATGGTCATCATCACTGGACCTCCTGAAGCTCAGTTTAAGGCTCAGGGCAGGATATTTGGAAAGCTAAAGGAGGAGAATTTTTTCTCGGCGAAAGAAGAAGTGAGGCTGGAGACCCACATCAAAGTTCCCTCCTCTGCAGCTGGACGGGTCATAGGGAAAGGCGGGAAAACGGTTAATGAGCTGCAGAATATGAGCAGTGCTGAGGTCATAGTGCCCCGTGATCAGACTCCAGACGAGAACGACGAGGTGTTTGTAAAAATCAGCGGCCATTTCTTTGCTAGCCAGACAGCACAGAGGAAGATTAGGGAGATAATTCAGCGGGTCAGGCGTCATGAGCAGAAACAACATCTTGGACCCTCAGAACCGCACAACTCCCAGTGACCTCCAGGGGACGACCACAGCTGGCGAATGTAGTCCTCCTGGCCAGCAGGGGGAGCCAGGGTGTCCTACCAAGCAGAGTGATCTACAGCGTGTGTGTGGCGTGAGAGTGTGTATTGCAGATTGTGACAGTGGTGCTAACATCCTGATAGCCACTGTTCATCATCTGGCCATGTAGCCAATAAATGAAAAGAAGGCGGGGCTTGCACTGTGGACACACCCCTGGGCGTGTTATTCTGAGGAGTGTATGAACCGTATAGCCGTAACGTTTGGGCTTACCTTAGGAGGAGCTGGATACGTCGTTCTACTGCAGAACTGACCTGTGTAGAACAGAACATGGACAGAACCgagctaaaaaaaacatacaggggttgg

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222569 lncRNA upstream 23324 1759931 ~ 1760554 (+) False tspear
TU222562 lncRNA upstream 75237 1706881 ~ 1708641 (+) True G164376
TU222434 lncRNA upstream 794365 989297 ~ 989513 (+) True G164284
TU222432 lncRNA upstream 831449 952065 ~ 952429 (+) True G164282
TU222426 lncRNA upstream 839004 944597 ~ 944874 (+) True G164276
TU222579 lncRNA downstream 6040 1802787 ~ 1838087 (+) True LOC103028062
TU222581 lncRNA downstream 6040 1802787 ~ 1838087 (+) False LOC103028062
TU222597 lncRNA downstream 79697 1876444 ~ 1877085 (+) True G164400
TU222607 lncRNA downstream 106319 1903066 ~ 1906873 (+) True G164404
TU222720 lncRNA downstream 319096 2115843 ~ 2118502 (+) True G164475
XM_007233770.3 mRNA upstream 837 1775451 ~ 1783041 (+) False LOC103029311
XM_007233772.3 mRNA upstream 837 1775451 ~ 1783041 (+) False LOC103029311
XM_007233771.3 mRNA upstream 837 1775451 ~ 1783041 (+) False LOC103029311
XM_007233773.3 mRNA upstream 837 1775451 ~ 1783041 (+) False LOC103029311
XM_022680050.1 mRNA upstream 837 1775479 ~ 1783041 (+) True LOC103029311
XM_022680052.1 mRNA downstream 9648 1806395 ~ 1822220 (+) True ehhadh
XM_022680650.1 mRNA downstream 26091 1822838 ~ 1836753 (+) False LOC103028062
XM_022680053.1 mRNA downstream 73739 1870486 ~ 1878855 (+) True nup35
XM_022679996.1 mRNA downstream 83401 1880148 ~ 1882693 (+) True LOC111194854
XM_007233764.3 mRNA downstream 296602 2093349 ~ 2191914 (+) True znf804a
TU222476 other upstream 303144 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1211685 538279 ~ 572193 (+) True G164126
TU222588 other downstream 26121 1822868 ~ 1834634 (+) False LOC103028062
TU222580 other downstream 38066 1834813 ~ 1838087 (+) False LOC103028062
TU222840 other downstream 693297 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 4348190 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 4363653 6160400 ~ 6237986 (+) False LOC111194881

Expression Profile