RNA id: XM_022680069.1


Basic Information

Item Value
RNA id XM_022680069.1
length 5205
RNA type mRNA
GC content 0.54
exon number 38
gene id cps1
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2912007 ~ 3011890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgatttttttttactttttctccaCGCGGTGCTGTTTTCAAACCCGGCGGACCGCTGCGCTCCTGTCCCGGCCACCCGAGACCCCAGTACCCGGTAACACAGCGGGAATATCCGCGGAGACATGCTGAGAGGAGCCGCCGTCCTTCTGAAGCGCCGCTGGCCGCCCAGAGCGTCCTCACACCGGCTACTGAGCCTGAAGGCCCAGACTGCACACCTGGTGCTGGAAGATGGCACGGTGATGAAGGGCTACTCCTTCGGCCACAGACAGTCTTCAGCTGGGGAGCTGGTGTTCAACACGGGGCTCGTCGGgtatcCAGAGGCCCTCACTGACCCCAGCTATAGAGGTCAGATCCTTACACTCACTTACCCCATTGTGGGGAACTATGGAGTACCAAACACACAGGAACTGGATGAACTGGGCCTGAGAAAGAATGTGGAGTCTGACCGCATTCAGGTCTCAGGACTGCTGGTGCAGGACTACAGTCATGAGTTCAGCCACTGGAACTCGGTGAAGTCTCTGGGTCAGTGGCTGCAGGAGGAGAAGGTACCTGCTCTATATGGGGTGGACACTCGGATGCTGACCAAGATCATTCGAGATAAGGGCACAGTGTTGGGGAAGATCGAGTTTGAAGGTCAGCCAGTAGACATAATAAACCCAAACGAGAGGAACCTTGTAGCAGAAGTCTCCACTAAggaaactcAAGTTTTTGGGAAAGGAAACCCTATTAAAGTGGTTGCAGTGGACTGTGGGATCAAGCACAACATAATCAGATTGCTTGTCAAGcGTGGTGCCGAAGTTCATCTGGTGCCATGGAATCATGATCTCATGAGTTTGGAGTATGACGGTCTTTTCATCTCTAATGGACCTGGAGACCCGTCTCTGGCTGAAACGCTGATTCAGAACGTTCGGAAGgTGCTGGAGAGTGATCGGCCTCAGCCTGTGTTTGGGATCTGCATGGGGAACCAGATCACAGCTTTGGCAGCTGGAGCTCAGTCTTATAAACTGCCCATGGGAAACAGAGGTCAGAACCAGCCGGTGCTGAATGTGATGACGGGTCAGGCCTTCATCACCGCTCAGAATCACGGCTACGGAATAGACAGCGAGTCTCTGCCTCCGGGCTGGAGCCCACTGTTCGTCAACGCCAATGACGGAACCAATGAGGGCATCATGCATAACAACAAGCCCATCTTCACTGCACAGTTCCATCCAGAGGCAAAGGGAGGACCCACAGATACTGAGTTCCTGTTCGATTCCTTCTTGTCCCTGATAAAGAAGGGGAAGGACGCGAGCATTGTGTCGGTGATGCCGAAGAAGCCTGTGCTTCCACAGAGAGCCCAGGTCTCTAAAGTATTGGTACTGGGCTCTGGTGGTTTGTCTATTGGTCAGGCTGGAGAGTTTGATTATTCAGGATCACAGGCTGTTAAAGCCATGAAGGAGGAGAACCTGAAGACCGTGCTGATGAACCCCAACATCGCCTCAGTGCAGACTAATGAGGTGGGCACCAAGCAGGCGGACTCGGTCTACTTCCTGCCCGTCACGCCCCAGTTTGTGACGGAGGTGATCAAAACCGAGAGGCCTGATGGCATCCTGCTCTCCATGGGGGGCCAAACTGCTCTCAACTGTGgagtggagctgTTTCGCAGTGGTGTCCTCCAGAAGTACGGAGTGAAGGTTTTGGGGACACCTGTTGAGTCCATCATGGCCACGGAGGACAGACAGCTGTTCGCTGATAAACTGATGGAGATTAACGAGAAGATCGCCCCAAGTATCGCAGTGGAATCGGTGGCAGATGCTCTGAAGGCAGCAGAGGAGATCGGCTACCCGGTGATGCTGCGCTCGGCCTATGCTCTGGGAGGACTGGGATCAGGGCTCTGTGCGGACCAGCAGAAGCTGGAGGAGACTGCACACAAGGCTCTGGCTATGAGCAGTCAGATCCTGGTGGAGAAGTCTCTGCTGGGCTGGAAGGAGGTGGAGTACGAGGTGGTCAGAGATGTAGCTGATAACTGCGTGACTGTCTGCAACATGGAGAACTTTGACCCCCTGGGAATCCACACAGGCGACTCCATCGTGGTGGCACCCAGTCAGACGCTCTCTAACGAGGAGTACCACATGCTGCGAGAGACCGCCATTAAAGTGGTGCGTCACCTGGGCATCGTGGGGGAGTGTAACATCCAGTACGCCCTGCACCCGTCCTCACTGGAGTACTGCATCATCGAGGTCAACGCCCGGCTCTCCAGGAGCTCTGCACTGGCCTCTAAAGCCACAGGGTACCCTCTGGCATTCGTAGCAGCTAAGCTAGCGTTGGGCATCCCTCTGCCCGAGATTAAGAACGCCGTGTCGGAGAAGACCACCGCCTGCTTCGAGCCCAGTCTGGACTACATCGTGACCAAGATCCCTCGCTGGGACCTGGACCGCTTCCAGGGCATGTCCCGAGAGATCGGCAGCGCCATGAAGAGCGTCGGAGAGGTAATGGCAGTGGGTCGCACCTTTGAGGAGAGCATCCAGAAGGCGCTGCGGATGTGCCACCCCTCGGTGGACGGCTTCGTGCCGCGGCTGCCCCTGAAGAGAGCCTGGAGTGAGCAGTGCGACCTGCGGCAGGAGCTGGCAGTGCCCTCCAGCACTCGCATCTTCTCCCTCGCCAAGGCCCTGCACGACGGCGTCACCGTGGACCAGATCCACCAGCTCACCGCCATCGATAAATGGTTCCTGCACAAACTCAGACGCATCACCGAGCTGGAGAAGCACCTGAGTCAGTACGACAGCTCCACAGTGCCCGGTGACGTGCTGCTGAAGGCCAAGCAGGAGGGCTTTTCAGACCGGCAGGTAGGGCAGGCCCTGGGCAGCTCTGAGGGAGAAGCCCGAGCCCTGAGGCACAGCCGCAACATCCAACCGTGGGTCAAACAGattgaCACACTTGCAGCAGAGTATCCCGCAGTCACCAACTACCTGTACTGCACCTATCATGGCCAGGAACATGACTTGGACTTCAGAGATCAGGGTGTGATGGTTTTGGGCTGTGGGCCGTATCACATTGGCAGCAGTGTGGAGTTTGACTGGTGCGCCGTGTCCAGTATCCGCACCCTCAGACAGATGGGGAAGCGTACAGTGGTGGTGAACCATAACCCAGAGACCGTCAGCACTGACTTTGACGAGTGCGACCGTCTGTACTTCGAGGAGCTGACCCTGGAGCGCATTCTGGACATCACCCAGCAGGAGTCCTGCACAGGTTGTATCGTCTCTGTAGGAGGGCAGATCCCGAACAACCTGGCCGTCCCGCTGCACCAGAACGGGGTGCGGATTCTGGGCACCAGTCCGCTGCAGATCGACCGAGCCGAGGAGCGATCTGTGTTCTCCACCATCCTGGATGATCTGGGTGTCTCTCAGGCCCCATGGAGAGCCCTCAGCTCCCTGgaaGATGCTTTTGCCTTCGCAAATAAAGTGGGTTACCCCTGCCTCCTGCGGCCGTCTTATGTTTTAAGTGGTTCTGCGATGAACGTGGCCTACGGGGAGGAGGAGATGAAGCGCTTCCTGGAGGAGGCGGCTCAGGTGTCACAGGAGCATCCTGTGGTCATCACCAAGTTCATTCGTGGAGCCCGAGAGGTGGAGGTGGACGCAGTGGCCAAGGCAGGCAAGGTGCTGGTTCACGCCatcacagagcatgtggaggacGCTGGAGTTCATTCAGGAGATGCCACCCTGATGCTGCCCACCCAGACTATCAGTCAGGGAGCCCTGGAGAAGGTGAAAACCGCCACCCGGAAAATTGCGAAGGCGTTTGAGATTTCAGGGCCGTTTAACACTCAGTTCCTGGTGAAAGGGAACGATGTCATGgtGATTGAGTGTAACCTGCGTGCCTCACGCTCCTTCCCATTCGTGTCTAAAACTATCGGTGTGGACTTTATTAACGTGGCCACCAGGGTGATGGTGGGAGAGCCAGTGAACGAGTCCCAGCTGCCCACCCTGGAGAACCCCATCATACCTGTAGATTATGTTGGAATCAAGgctCCGATGTTCTCCTGGCCGCGTCTGAGGGATGCTGATCCAGTGCTGCGCTGTGAGATGGCCTCCACTGGAGAGGTGGCCTGCTTTGGACCAAACATTTACTCAGCCTTTTTGAAGGCCATGCTCTCCACTGGATTCAAGCTCCCTCAGAAAGGCATCCTCATCGGAATCCAGcATTCTTTTAGGCCAGACTTCCTGTCCACTGCGCACCAGCTTCAGGAGGAGGGATTTAAActttatGCTACAGAGGCTACCTCAGCCTGGCTCAACGCCAATGATGTGTCTACGACCCCCGTCGCTTGGCCTCGGCATGAGGGGAAAGAGACCACCCTGCCCAGCATTAGCAGGTTGCTCAGTGACGGCCATATTGACCTGGTAGTGAACCTCCCCAACAACAACACCAAGTTCCTGAAGGACAACTTCCTCATCCGCAGAATGGCTGTGGACTACGGCGTTCCTCTCATTACCAACTTCCAGGTTGTGAAGCTGTTCGTTGAGGCCATCAAGTACTCCAGTGAGCTGGACACCACGAGTCTCTTCCACTACCGCCAGCGAGAGAACGAGCAGAAGGGCTAGAGACGCCCAGACCTCTTAAAACTCATCTCCCTTACCGAAACCTCCTGAGAAACCTCCAGGACTCTGAGCGGGTCCACCTCTGAAGGTCCGGAGTGCCACAGGGATGGAGTCTGAGGTCACTTGGAGGGTGGTTACAGTATTTCAATTCCAGGCACTCTTAAGGGTAGTGGGTGTTTTTTAActgggtattttttttaactgtgttgaAGGACACCAGCTTGCATCCAGTTGAGTATCATCAGAATAAGAATGGAAAGAAGGGGTATCTGGGATTTttgggaacttttttttttttaaagcaagatcttcttattgttgtttttcttgttgtttacATGTGTGGGTATCTTTCCTTGACAGTATTTCTTACTATGTTAAAGATAGTAATTTCTATGCCCTAAAGGGGCTGCTGGACTTCCAGAGCCTATGATTGGCTTTggctttggtttattttgtatttttataagttCTAGTCTGGTTATTCAGGCTACGATGGAGTTAGTTTACAGTAGACCACTGAAGTGATGAATTCTGCATTCTGTAGTCTTTGTTAGGATTAAATTTGGCATTCTGGGCCCAACCTCAATTTTTAGTTGCGGAAACGTATAGCAGAAATGTTGAGTAGA

Function

GO: NA

KEGG:

id description
K01948 CPS1; carbamoyl-phosphate synthase (ammonia)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222966 lncRNA upstream 52639 2858618 ~ 2859368 (+) True G164642
TU222964 lncRNA upstream 71329 2836766 ~ 2840678 (+) True G164640
TU222959 lncRNA upstream 128412 2781665 ~ 2783595 (+) True G164635
TU222957 lncRNA upstream 140154 2771346 ~ 2771853 (+) True G164633
TU222899 lncRNA upstream 179024 2657122 ~ 2732983 (+) True G164590
TU222980 lncRNA downstream 279 3012169 ~ 3013616 (+) True G164652
TU222983 lncRNA downstream 353 3012243 ~ 3013616 (+) False G164652
TU222984 lncRNA downstream 1139 3013029 ~ 3013616 (+) False G164652
TU223037 lncRNA downstream 70526 3082416 ~ 3082950 (+) True G164699
XR_002651317.1 lncRNA downstream 603499 3615389 ~ 3617690 (+) True LOC111194872
XM_022680068.1 mRNA upstream 36941 2660455 ~ 2875066 (+) True map2
XM_022680066.1 mRNA upstream 256293 2604058 ~ 2655714 (+) True kansl1l
XM_022680063.1 mRNA upstream 438110 2440656 ~ 2473897 (+) True LOC103024889
XM_007233764.3 mRNA upstream 720093 2093349 ~ 2191914 (+) True znf804a
XM_022679996.1 mRNA upstream 1029314 1880148 ~ 1882693 (+) True LOC111194854
XM_007253262.3 mRNA downstream 1028096 4039986 ~ 4043593 (+) True LOC103033219
XM_007253249.3 mRNA downstream 1367132 4379022 ~ 4448620 (+) True vwc2l
XM_022680077.1 mRNA downstream 1659242 4671132 ~ 4734221 (+) False hibch
XM_022680078.1 mRNA downstream 1659257 4671147 ~ 4734221 (+) True hibch
XM_007253246.3 mRNA downstream 1744854 4756744 ~ 4760314 (+) True mstn
TU222840 other upstream 419016 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 1073920 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 1077373 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 1431273 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 2339814 538279 ~ 572193 (+) True G164126
TU223959 other downstream 3133047 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 3148510 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 3328105 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 3328105 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 4373243 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile