RNA id: XM_022680078.1


Basic Information

Item Value
RNA id XM_022680078.1
length 1494
RNA type mRNA
GC content 0.50
exon number 15
gene id hibch
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4671132 ~ 4734221 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGACCGGGCTCAGGGAGAGTTCAGACCCCGGCGTGCAGAAGCGCAGCAGCGGCTGAGTGGGAGATATCAGTACTTTCAGCTGAGCGATGGCTTTGAGGGTCTTAAAGACTGCATTGAGAAATCAAGATACATGAGACCAGGCTACTTTGTTCTTCCAGTCTTCAGCTGTCCAGTTTTGCCTGAGATCCGTCTACAGACTGCATAAGATACAAGCACACCTGATGTCCAGCAACGCAAGTCCTGAGGTTTTGTTTGAAAGAGTGGGGAATGCAGGCGTGATCATACTGAACCGACCCAAAGCTCTCAATGCGCTGACCCTCAATATGATCCGACATATTTACCCTCAGCTTAAGaaATGGGAGAGTGATTCAGAGACTAGTATTGTAATCATCAAGGGTGCTGGAGATAAAGCTTTCTGTGCTGGAGGAGACATTAGAGCTCTCTCAGATGCTGGGAAAGTAGGAGATCCTTTAGTAAAAGAGCTTTTCCGTGAGGAATACATTCTGAACAACGCTACAGGTACCTGTAAGAAGCCATATATAGCCCTCATCGATGGAATTACGATGGGAGGGGGTGTTGGCCTTTCGGTCCATGGGCGGTTTCGTGTGGCCACCGAGAAGACGCTGTTCGCCATGCCGGAGACTGCTATTGGGTTGTTCCCTGATGTCGGAGGTGGCTACTTCCTGCCGAGGCTCCAGGGAAAGCTGGGGCTGTTCCTGGCTCTGACCGGCTTCAGGCTGAGAGGCCGAGATGTTCAGAAAGCAGGGGTGGCCACACACTTTGTGGAGTCTGAGAAGATCGGCGCTCTTGAAAAGGACCTGGTGGACCTGAAGGTCCCCTCGGTCAGTGAAGTGGCTCAGGTCCTGGACTCCTATCACCAACAGAGCACCCTGGACGCTGAGAAGTCGTTCGTCCTGCAGCAGCACACTGAAGCTATTGACAGgcTCTTTACAGCCAGCAGTGTGGAGGAGATCATGGAGAACCTGCAGAAGGACGGCTCTGCTTTTGCTCAGAAGCAGTTAGAGATTTTGTCTAAGATGTCTCCAACGTCTCTGAAGCTGACCTTCAGACAGCAGCAGGCTGGAGCCACTATGACTCTTCAGGAAGTGTTTGTGATGGAGTACAGACTCACCCAGGCCTGTATGAGAGGGCATGACTTCTATGAGGGAGTAAGAGCGGTGATTATCGATAAGGACCAGAATCCTAAATGGAAGCCCCCGACTCTGGCTGAGGTCACGGAGGAGTTTATGGAAGAAAGCTTCAGATCACTGGGAGAGAGAGACCTGGTGTTTTGAGCACTGCTCTACTGCACCactctggagagagagagagaataagaacattttaagtgcatttttttcttcatcatccctgaaatttattaataaactacttTGCGCTGAGTCAGTGTTGAGGGGGAAAGTACAATGCTGAGTTCCTGAAGTGTACAAGGACCGAACCTTTTTTAGTGCTAGTCTTTCTGCTGGCTGCTA

Function

GO:

id name namespace
GO:0006574 valine catabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity molecular_function

KEGG:

id description
K05605 HIBCH; 3-hydroxyisobutyryl-CoA hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223313 lncRNA upstream 20254 4616803 ~ 4650893 (+) True G164944
TU223278 lncRNA upstream 167736 4501948 ~ 4503411 (+) True G164910
TU223263 lncRNA upstream 179438 4449979 ~ 4491709 (+) True G164899
TU223274 lncRNA upstream 216332 4452048 ~ 4454815 (+) True G164907
TU223270 lncRNA upstream 231427 4395312 ~ 4439720 (+) False G164903
TU223365 lncRNA downstream 159924 4894145 ~ 4896061 (+) True G164990
TU223402 lncRNA downstream 282513 5016734 ~ 5056807 (+) True G165013
TU223404 lncRNA downstream 291033 5025254 ~ 5026263 (+) True G165015
TU223426 lncRNA downstream 382694 5116915 ~ 5117115 (+) True G165034
TU223435 lncRNA downstream 551502 5285723 ~ 5295554 (+) True LOC103021746
XM_007253249.3 mRNA upstream 222527 4379022 ~ 4448620 (+) True vwc2l
XM_007253262.3 mRNA upstream 627554 4039986 ~ 4043593 (+) True LOC103033219
XM_022680069.1 mRNA upstream 1659257 2912007 ~ 3011890 (+) True cps1
XM_022680068.1 mRNA upstream 1796081 2660455 ~ 2875066 (+) True map2
XM_022680066.1 mRNA upstream 2015433 2604058 ~ 2655714 (+) True kansl1l
XM_007253246.3 mRNA downstream 22523 4756744 ~ 4760314 (+) True mstn
XM_007253245.3 mRNA downstream 76327 4810548 ~ 4817692 (+) False ormdl1
XM_007253244.3 mRNA downstream 78481 4812702 ~ 4817692 (+) True ormdl1
XM_007253242.3 mRNA downstream 88082 4822303 ~ 4827751 (+) True osgepl1
XM_007253240.3 mRNA downstream 120182 4854403 ~ 4859014 (+) True LOC103025618
TU222840 other upstream 2178156 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 2833060 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 2836513 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 3190413 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 4098954 538279 ~ 572193 (+) True G164126
TU223959 other downstream 1410716 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 1426179 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 1605774 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 1605774 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 2650912 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile