RNA id: XM_022680135.1


Basic Information

Item Value
RNA id XM_022680135.1
length 2225
RNA type mRNA
GC content 0.52
exon number 16
gene id ccdc148
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6628606 ~ 6733187 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGATCAGTCTCCTTGGTTACATTTTGTACACGAAGCGcgtgaagtgtttttttttcaatggcgGATTAGCTAAACAGCGTTTCCTGGGGTTGAAACAGCCCGCACATCTCCTGAATCAATCAAGATGCATTAAATCGTGACGTGGAGAGCCGTTCTGTTGTTTTTAACCACCTGTCACACTTCTTTCGGAGGCTGAGGTGAAAAGGAGATGAGTGGGAGGGACCTGCGTGCCTTCCTGGCGGGTCATCGGGCAGAGGACACAGAAAAGCTGACCCAGAGAGTGATGAACGAACTGGGCCTTTCCAAATATAAACCAGTTCAGTATGAGGAGCTTCAGGCCCTGGTGGAAGCAAAGAGACTCTCAACTGAGTGCATTGAGCACAAgGTGCAGCAGACTCTGCGTGCAGTTCAGGAGAGGAAACAGACCTGCCTGCTGCGCCAACACAGACAGGTGTGGACCTCTGAGAACCACAGACTGGACAAAGCCAGagagaaagcagagacAGATGTCAGGAGCTTCCTGGTTAGAAGCAGACTGGAGCATCGGGAGGATGGAGATGCCAGAGATGTCATGAGTGAGCTACTGGACTATGagctgCATTTGGAGGAGGAGCGTGATGCATTTAGATCGGCCACGGTACTTCCAGTCTGCCAATTGAAAGAGGACCTGCAATGGAGAATGACATCAGGACCTCCAGCAGCCAATCAACATGCAGAGTGGGAGGAAATCCTCCAGCAGGTGGTATTTGTGAAAGAACAGCAGCAGACACTGATGGACACACTAGAGGAGGAGGGTTTTTCACTTCAGCAGGAGCTTTCTGCTTATGGACTGCAGGCCAGTCTGGACACTGCCGCAGTGCAGGAGCATGCAGGTGCTCTGATGAAGGTGCCACAGGAGGTCCTGACCGCAGACTGCCCTTACACTGACCTCAAAATGTCTCTCATCAGTGCCTTTCATTCCCTCTCCGACAAATACACACAACAGCTGGACACAGTGCACAACAGACTTCAGGGCATGGACAGgaaCTGTGGGTGGAGTGAGCAGGACCACTTGCGTTTTCTGCACACTGTGAGTCAGTATAGACCCCAGCTGAGGAACCACAGAGGCCTGTGTCTGGACATGCTCCACAGAGTTCTACCCCACTACTCCACTGCAGAGCTGAACTCCCACGGGCGGAGCTGGGACTGGTACAGGTTCAGTGTGGAGCGTGAGAAGCTGCTGTTGGAGAGCTGGAGCAGGGACTGGACGGCACTGCTGCTCCGCGCTCTGGAGGTGCTGGAGGAGGCCAGAGCTGAACACGGAGAACAGCAGAACCTGCAGAAACATCGCACACACCAACAGCACATCTGTGCTCAGCTAAAACacaaggtgcagCAGTGGCGTGAGCGGCAGGAGGAAGTCGCTCGGCTGGAGGCAGCTGTGGCAGCTCgctgggaggaggaggagaaggaaagacagaaagaggagCAGGAAAGAGAGCAGACCAAGAGGAGCAGACAGAAACAgcggCTGCTTGAGTTTCATGAGgagcagaggaggaggagcatgAAGTGGCggaggagagaagaggagagactGGCACAGCTGAAGGGAGAGCTGGAGGAGCAGGCcaggagagataaagagagagtgcaGTTTAGGGAGAAGCTGCTGGAGCAGAAAAAGCAGGATCATGAAGCTAAAGAGCGTCTCAGacagaaagaggaagaggacagagaggagagactcaACAACCTACGCaaccagGTTGCTGTAGTGGCGGAGGCAGATCCAGAGAGAATGATGGGACAGACTGAAGCGTGGAGAGTCCGTCATCATCCTGACCAAGAAGAGTTTACACTGCAGAAACCCCTGTATcacttacacacttatacaGATACACAGatTGTGGCCGACCCACGTGTGCGTATAGAGCAGGCGCTCAGGACCGCAGGCCTCCATCACACACCTTACGCTAGAGCTCTCCTCTCAGAGATCCAGCCTCCAAAACCACCCCGACGAGACACACAGTCCACCGTCCTCAGGTCCTAACCTCAGAGTTCTGCACTCGTTAATGTACACACTGATAATTCAGctcagatcagcacagcagatCTGTTAATATTTCAACACAAATCAGCACGGCCCAGACATTCACCCCAAACAGCCACagtacagagacagacagatagatagatagatagatagatagatagatagatagatagatagatagatagataga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224096 lncRNA upstream 156881 6470766 ~ 6471725 (+) True G165507
TU224077 lncRNA upstream 185334 6443000 ~ 6443272 (+) False G165494
TU224079 lncRNA upstream 185334 6443000 ~ 6443272 (+) True G165494
TU224068 lncRNA upstream 210357 6416344 ~ 6418249 (+) True G165487
TU224058 lncRNA upstream 215668 6405879 ~ 6412938 (+) False LOC111194884
TU224130 lncRNA downstream 18225 6751412 ~ 6751783 (+) True G165534
TU224126 lncRNA downstream 152661 6885848 ~ 6890770 (+) True G165530
TU224324 lncRNA downstream 350814 7084001 ~ 7084301 (+) True G165643
TU224329 lncRNA downstream 439593 7172780 ~ 7173360 (+) True G165648
TU224337 lncRNA downstream 514547 7247734 ~ 7247939 (+) True G165656
XM_007241745.3 mRNA upstream 283203 6339995 ~ 6345403 (+) True wdr4
XM_007241746.3 mRNA upstream 283203 6339995 ~ 6345403 (+) False wdr4
XM_015601225.2 mRNA upstream 321278 6296186 ~ 6307328 (+) True tmprss3
XM_022680652.1 mRNA upstream 334838 6289550 ~ 6293768 (+) True LOC103026554
XM_022680117.1 mRNA upstream 428853 6179955 ~ 6199753 (+) True LOC111194881
XM_022680141.1 mRNA downstream 28164 6761351 ~ 6832556 (+) True LOC103030586
XM_022680142.1 mRNA downstream 28170 6761357 ~ 6832556 (+) False LOC103030586
XM_022680143.1 mRNA downstream 38214 6771401 ~ 6832556 (+) False LOC103030586
XM_022680144.1 mRNA downstream 38703 6771890 ~ 6832556 (+) False LOC103030586
XM_022680145.1 mRNA downstream 105199 6838386 ~ 6884350 (+) True acvr1c
XR_002651330.1 other upstream 283203 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other upstream 283203 6339995 ~ 6345403 (+) False wdr4
TU223975 other upstream 390620 6160400 ~ 6237986 (+) False LOC111194881
TU223959 other upstream 482637 6144937 ~ 6145969 (+) True G165406
TU222840 other upstream 4135615 2490044 ~ 2492991 (+) True G164539
TU224375 other downstream 651946 7385133 ~ 7429366 (+) False LOC103040759
XR_002651338.1 other downstream 1296208 8029395 ~ 8034584 (+) True LOC111194887
TU224843 other downstream 2305055 9038242 ~ 9078728 (+) False G166015
TU224842 other downstream 2342133 9075320 ~ 9085850 (+) True G166015
TU224855 other downstream 2403774 9136961 ~ 9148559 (+) False LOC103024790

Expression Profile