RNA id: XM_022680142.1


Basic Information

Item Value
RNA id XM_022680142.1
length 3589
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC103030586
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6761351 ~ 6832556 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggaggagtGCGGGGAAGCGGAGTCGCGGACAGGCAGCGGCTGTTCACACAGTAATGCGGATCAGGCGGGTTAATAACAGCCATTTCTCCCAGTCTGTCAACTTCATGCCCGCCGAGGGACGGTGTTTGTAACCGGAGCCGGAGACTTTTATCCTACCGAGTCCTCTAACCCGACTCAGAGCCGCGGCTGGTGAATCCCGGAGGAATGGCAGCGGCGGAGTAGGTCGGGGCGAGCCGCCCGAAATAACCGGACTTTTCTTTATAAAGCTCCCGCTGAATTCCCGCGGGTccggagcagagagagagagGTCTGTGATGGTGGATGGCATCATGATTCTCCTGCTTGTGGTCCTGATGGTTTTACCAGCCGCCAGTACAGAAGATAAAGCCACTGCCAGTGACTTTGAATGTGTGTGCGAGGGGCAGTCATGCGGCAGCGACGGACGCTGCTTCGGCCAGCAGtgcttctcctctctctccatccgGAACGGGACTGCCCTCCGCCAGAAGGGGTGCATTGTGGGTAAGGAGGAAGAGGCGGGCCGGTGCGTAAGCTCCCCGCCGACGCCTGGCGTCACGGTGCACTGCTGCCAGGGAACACTGTGTAACAGCAACGTTACAGTGGAGATGCCGAGCACAGACTCCAGCGCAGCCTCCGCGCAGCACGAGTGCGTGTGTGAAGGACCGGAGTGTGTGAGCGGTGGGCGGTGTGTAGGAGATCAGTGTTTCTCCTCCGTTACAGTGACTGGTGGTAACCTGCAGCATCACAAGGGCTGTTACTCCGCCTCCCAGAGGGACGGGGCTAAATGTGACACACCCACATCACCTGACAGCATCGTCAGCTGCTGCTCGGGTCACCTGTGTAACGCCAACGTCACTGTGGAGCCGCCAACCAGAGATGTGGAGACGAAGCTTCTTCCTAAGGAgcacgagtgtgtgtgcgagggCCGCTCGTGTGTGAGTGGAGAGCGGTGTATGgggcagcagtgtttctcatcTCTGACGTTGAGTGATGGGGTGCTGGTCTATCAGAAGGGCTGTTTCACCGTGTACGAGCAGGGCCGCATGACCTGCAAGACCCCGCCCTCACCTGACCAGATCGTGGAGTGCTGCCAGGCTCACCTGTGCAACATGAATCTCAGCGTGGCTCTTCCTGTGAGAGtGGTGGAGGGTCCTAACTACAGCGTCACAACACTGGCCATCGTGATCGTGGCTCCGGTAATCGTCCTTATTTTCCTTTCCACTGCCGCCATCTTGGTGTTCCGACGGATCCACCACAACCAGATGGAAAGGTTGACGGCTCGAGATGCTGAGTACGGCACCATCGACGGGCTCATCGCCTCCAACGTTGGGGAAAGCACACTTGCTGATCTGTTGGATCACTCCTGCACGTCTGGCAGTGGATCAGGACTGCCTTTCCTGGTGCAGCGGACAGTCGCCAGACAGATCActctgaatgagtgtgtgggGAAAGGGCGCTATGGCGAGGTGTGGAGAGGTCAGTGGCAGGGTGAGAACGTGGCTGTAAAAATCTTCTCTTCCCGTGATGAAAAGTCTTGGTTCCGGGAGACAGAAATCTACAACACAGTGCTGCTGAGACACGAGAACATCCTAGGCTTTATCGCATCAGACATGACGTCTCGTAACTCCAGCACACAGTTGTGGTTAATCACACACTACCATGAGATGGGCTCCCTCTACGATTACCTCCAGCTGAGCACATTGGACGCCCCGTCCTGCCTACGGATGGCGCTGTCCATCGCCAGCGGCCTGGCCCACCTGCACGTGGAGATCTTTGGCACGCAGGGCAAACCGGCCATCGCCCATCGAGACCTGAAGAGCAAGAACATCCTGGTCAATAAGAACGGCCAGTGCTGCATCGCTGACCTCGGTCTGGCTGTCATGCATTACCAGGATACGAATGAGCTGGACGTGGGCAACAACCCTAAAGTGGGCACCAAGCGCTACATGGCTCCGGAGGTGCTGGACGACTCCATTCAGGTGGACTGCTTTGAGTCTTATAAAAGAGTGGACATCTGGGCCTTTGGCCTTGTGCTGTGGGAGATCGCCAGACGGACGGTCAGCAACGGTATTGTAGAAGACTACAAGCCTCCCTTCCATGATGTAGTGCCTAGTGACCCCAGCTTTGAGGACATGAAGAAGGTGGTGTGTATAGACCAACAAAGACCAAACATCCCCAACAGATGGTTCTCAGATTCTACTTTAACATCCATCGCCAAACTCATGAAGGAGTGTTGGTATCAGAACCCGTCTGCGCGGTTAACGGCCTTACGCATCAAAAAGACTCTGACAAAAATCGACAATTCTTTGGACAAGATAAAAGCGGACATCTGAACTGCTTCTGTACGGAAGATCCTCAAAGGCCTTTACCACGTCTAGCGGACAGCTCGTCTGGAGAACCAGGATGGAGGAAAAAAGGGACCGCTTGGGCACTGTGCTCTCCCAGAgacacaatgtatttattttaaacacgcAGTGGGACATGTTTTGGCATCCAAAGATGGCACAGtgggcatttaaaaaaatatatactatggAAAAAAGACTACGGAAAGTCCTCGAAATGTGGCTTATCTGAAGACCTAGCTTTCACACCTAGTCACGTTCTTCAAAAAAGAACAGTAGCAGAGGAGCTTGGAGAAGGTGGCTTTATAGAGCTATGGTTTACTTCTAATGCAGCTTTGATTTTTAGACCTGTCTGGAGAAAGTGTCTTTCATTTAGCAATATCGACCGTGCTTCTTTTTGGTTTATTGCACTGGCAGTCTTTTAGCATTCCTTACTTGCACTGTTacagaaaaagataaaagacaATGACAATTTGCCAAAAAAATGGTTCTTTTGTATTCAACTACCATCATATCCTTATCCATAATCAATCAGAGAGACAAAGAATAGCTAGATTTACTTCGgctgcctttttttttgttgtatgttTTTGCACTGGCGTTTACAGTATAATTGGACAAAGTGtctgcattcattcattcatgtcactctgtaatttatttaactcaGTTTTTGAGCGGTATGATGGCCACTGTGTCGCTGTTCTGCCTGAGATGTTTAACTTgtcacagatttttttgtatcattgagcatttagcctttttttcttttgtttgtttcataaGCTTTATTGAATACAGATGCTaaaagagtaaataaaaaaaatactagaagttccttaactcttaaaaaaaaaaaaaaaaaaaaatctaagcaaTGCCTGtacgctgtgtgtgtttgaaccTACGCAACACAAGCAGCAGCAAAGCAATTGCGCTAATGGGCTATTTTAATATGGACttatttatactattttaatatttaataattcatgTATTAATGGTCTATACgacaaaacacagaatttatgATATGTCACACCATTGATTCCACTGACAATCTTTCCCATACGTTATTACTTCTATTATGAAAATGAAATTGCATTTaaaagaacaggaaaaaaaaaatcttcaggtTTGTACACAAAAAACAGACTCCTCATTTATCTGCTTCCTTTTGTAAGAATTATGGCTAATTACAGATCAGAAAGCTGAAACACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224130 lncRNA upstream 9574 6751412 ~ 6751783 (+) True G165534
TU224113 lncRNA upstream 19556 6664247 ~ 6741801 (+) True G165523
TU224096 lncRNA upstream 289632 6470766 ~ 6471725 (+) True G165507
TU224077 lncRNA upstream 318085 6443000 ~ 6443272 (+) False G165494
TU224126 lncRNA downstream 53292 6885848 ~ 6890770 (+) True G165530
TU224324 lncRNA downstream 251445 7084001 ~ 7084301 (+) True G165643
TU224329 lncRNA downstream 340224 7172780 ~ 7173360 (+) True G165648
TU224337 lncRNA downstream 415178 7247734 ~ 7247939 (+) True G165656
TU224387 lncRNA downstream 662085 7494641 ~ 7535072 (+) True G165688
XM_022680135.1 mRNA upstream 28170 6628606 ~ 6733187 (+) False ccdc148
XM_022680137.1 mRNA upstream 28170 6628644 ~ 6733187 (+) False ccdc148
XM_022680136.1 mRNA upstream 28170 6630290 ~ 6733187 (+) True ccdc148
XM_007241745.3 mRNA upstream 415954 6339995 ~ 6345403 (+) True wdr4
XM_022680145.1 mRNA downstream 5830 6838386 ~ 6884350 (+) True acvr1c
XM_007253756.3 mRNA downstream 64078 6896634 ~ 6908752 (+) True LOC103026442
XM_007243275.3 mRNA downstream 80556 6913112 ~ 6916257 (+) True LOC103041636
XM_015607003.2 mRNA downstream 277602 7110158 ~ 7118514 (+) True nr4a2
XM_022680147.1 mRNA downstream 471029 7303585 ~ 7376769 (+) True LOC103038369
XR_002651330.1 other upstream 415954 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other upstream 415954 6339995 ~ 6345403 (+) False wdr4
TU223975 other upstream 523371 6160400 ~ 6237986 (+) False LOC111194881
TU223959 other upstream 615388 6144937 ~ 6145969 (+) True G165406
TU222840 other upstream 4268366 2490044 ~ 2492991 (+) True G164539
TU224375 other downstream 552577 7385133 ~ 7429366 (+) False LOC103040759
XR_002651338.1 other downstream 1196839 8029395 ~ 8034584 (+) True LOC111194887
TU224843 other downstream 2205686 9038242 ~ 9078728 (+) False G166015
TU224842 other downstream 2242764 9075320 ~ 9085850 (+) True G166015
TU224855 other downstream 2304405 9136961 ~ 9148559 (+) False LOC103024790

Expression Profile