RNA id: XM_022680151.1


Basic Information

Item Value
RNA id XM_022680151.1
length 6086
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC103040141
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 7495151 ~ 7538080 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaagatatatactCAGCTCACACTACATGATTTAGCAGCACACAGACTGTATATTTATACGCTAAGCACTAACATATGTCAAGCCATAGGTTAGCATGTTCACACGTACAAAGGGGGCCCGTCCATGATTCAATCGAACCCCATTCTTGGAAAACAACATGGCAGTTAGCAACTACTAGCGGATCAGGTGGTCAAGACGCTCTCCGGTGTCAGTTTCAGATTTATGCCTTACTTCAGCTTTTTATAGTGATTTGATATTCCAGGAGTTATTTGTCACGTCTCTGAAGCCCCCAAAATAAATTGGTAGGGCTCCTGAAGGCGGGCTGAGTGCGAGACTCAGTGTGGCTCTGATCCTCCTGTCATGTCAACGTGTGCGCTGCTGCTGTCATCTCAGGCAGCCTGCGGGCTCAGCGAATCAACACACTCCCGCGAGTCCCCTCTGCAAGCAGACCTAGTGGACCCCTGTCCACCCCCCAGGCTCTGCAGACCCTGCGGGGAGAACGAACCTGTTGCAGAATGTCTGGAGTGTTTTACGGCCTGTGAGCTGTGCGAGCCCTTTGTGGAGAACAAGTCCTTTATGAAGAGCAACATCACTAAATACTTGGAGACCTCAGTCTTTTTTCGAGGCAAGAGCATAGAAGCTAAAATGCCTGCCGATCTTTGTTTCGACCCGTCTAAAGTCTCAGAGCAAGACTATCCGAAGGAGGAAGCTGCGTCTTTGGAAGTAGCGCAATCCAGCATGatttctacacagatttctgttaACTTCACAGTGCACCAGACCATCAATGGACTAAACCAGTCTGGTGCAGATTACCCTGAAGAGCATGATCAGTTCAATGAAGAATTATTGGAGCAGGAGGACAAATTTGATTCTTCAGAGAGCAGCAGTCTGTCTGACTACAGCTTGGAACACAGTGAGTCTTTTGCAATAAGCAGCTCTTTTGACCTCTTGGAAGAAAAAAGCCAGTATTTCGAACAAAGCATGGAGTCAGAAATCAGTGACGCAGAACCGTTTACCGTACCCAAAGTCAAAACTGACCTTTCTGAACAAGTAGATGCAGAAGAAGTCCCAGAGCTTGTTTCTGCAGACTGTGACtcactttatgaacatgaagcATTTTTTGAAGACCCGTCAGAACAGCACAGGACGTCTGAAGGTCTTGAAAAAGATGTTTTGGATTTGTATGAACAATGCCCAGAATCTGATCTGGATTCCCAACCCTGCAAAGACTTGGATCACTCCGAGCCTAACAATCAAAACATGCCCTCTGAATACCATGCCACACATTTTGAATCCTCTGAACTGTGCCAGGCCCCTAAAGAAAGAAAACCTGCTGAGCTCTCCGAGTCCCTTGAGCAGCAACCACTCGCTGGACAAATAGAAACCACAGACAAGAGCGAGTTTACTGCTGAATATGTTCTGGAATCCTCTACTGAATTACATGATGAGAGCTCTGATCACGAATCGGAGCAGACTGTTGAATTTTACACTCAGCAAGAGCTTTTCAACTACAACCATCTGTGTGAACATGATGGTGAATGTGATAAGACGGTAGAACAATGCTCAAGTTGTGGAAGGTACTTTGAGAAATGTGAAATTCCTGAACTATGCAATCCCTCTGAGCCCACTGACCCTTCTGAAAACCCACAACAAAGCCAACCTGTTGAAAAGTGCCTGGAATTGTGTGAGAGTTCTGGAACAGAGTGCTCTGTGTTTCACACCTCAGAGCTCCCCAGAGAAATCCCTGCAGCTGAAAGCAACAAAAACAAGGCTGGAAAACGCTCAGAGTGCGACATGATGTTTTTTGGATCGATGGAAACTTTTGAGACTCGTTGGCTTTCTCAGTTTCTTGACTATCACAATCAACAGGACACTTCTAGCTCTGTAAACCAGGAAGCCCCTGATGATGTAGTCACTGAGCCAAGTGATGAGGTACCCATCAGTGACTGTAATGATGATTATGAACCTGTAATTGAAGTGTCAGATGACTCAGTTAAGCAGAAGGTTCTCTGTAGGGTGTGTGAAAGAAGAGAGGAAGGGCAGTTTCATTATGATGAACCTTCTGAACTGTTTGAACTTTGTGACGTTAAGGCTGAAGCTTTTGAGCTTGATGCTGAAGGGAGAAGATCTGGGGAGCTGGTTGTAAAAAGAGGCTCACTGGATGAATCTAGTGAGGAAGAATATGTCGACTGCATTGACAGCAAAAGCCAAGACAGCACTGAAACCGATGAATCGTTCAAAAGTTTTGTCGATGATACAGAAGGTTTTGAAATCTATACTTATCAGTCTGATGATGGAAAACATTTGCAGAATCTCTCTGAGGACGACGAGGCTTATGAACATTACACTTCTGACAGTCAAGAATCATGTGAGCTGTGCGATGGTCATGATGATCCCTGTGACCTATATGTTCATGACATGCTAGAAGCAGATGAAGAAATTCCCCAGATACCCCAGGAATCCAGCTTCAGTCACAAAATCACAGGGCAAGAAATCATTAAAACCTACGCAGAGGCATTGTCCACAGGACTTTCTGTAGAAAACGATCAAGGCTACCAACCCAGTGCTGATCACTCAGAAACCGAAAGTGAGAATGAAGACTATAGTTCTGATCTTTGCACTGAAGATACCACCAGGCTTCATGCTGTGGAAGATTTGAGTAATGAACCACTCTGTGAAGAAGTAATCGAGTTCTGTGAGAAGACAGAAGTGCTGGAAATTTGCGATAGATCAGGTGAGGTTTATGCACTTTCCAGTGAAGATGAAGATAATTGCAAGTGTCTGCATGTGGAAGATACCTCAGATGTCCATTATCTTCAAAGTACACATCACAAACAAGAAATCAGTTCATGTGAAACACTTTCTGAAAAGGGAAATATTTATGAATGTGAGGTTTCTGACATTTCAACAGAGGAAGCTACACAAGACCTAATTCCAGAGATCAGAACAGACGAAGATAAAGATGATTCGACTGATACCAGTAATACCCCAGTCAGTGAAATCTGTGAAGATTGTGAAGGCATTGATGAAGTGGATGGTGCTCACAGACCTTGCTGTGGAGAAATAGAAATATGTGAAGATGACGAGGCCTCTGTATTTGACTTTGAAGATGTAGTGCCAGACGTTGAAGAGAACAACTTGATAAATGGAGATGTAGATTTGCAGAAAAGCTCTCAAGATCTTCTAACTGATGTCATACAGGCGACGGAAACGAAAGAGCCTCCTGAGCTTTGTGATGTGCCTATTAATCAAACAGAAACTGCAGAAACTGATTCTCCAGCGCAAAGTGAAAGCAGTACAAAGTTGGAAGATCTGATATGCCAAGTTGCAAGAAATGATTCAAAAGAACATGATGAGGAAAGAAAGGCAGCTAAGGTAGCCAGTCAGAAAAAGGCAGCCTCTGAGGAGGCGGAGGCCTGTGAGGACAGTGAAGCTTCcgatgatgaggaggaggaagaataCCCGGAGTCCTGCAGTTGTGAATTCTGTGTGCCATCAGATGAGCAGGTGCCAGCCAAGCCTCTCCTGCCGCAGATCAAGTCTAAAGACGCAGGAAAGATCTGCGTAGTGATCGATCTGGATGAAACACTAGTGCACAGTTCATTCAAGCCGGTGAACAATGCTGACTTTATCATTCCAGTGGAAATTGATGGGGCAGTACACCAGGTATATGTGCTGAAGCGACCTCATGTGGACGAGTTCCTGAAGCGGATGGGGGAATTATTTGAGTGCGTGCTGTTCACTGCCAGCTTAGCCAAGTATGCCGATCCTGTCTCAGACCTGCTGGATAAGTGGGGGGCCTTTCGCTGCCGTCTCTTTCGAGAATCCTGCGTCTTCCATCGTGGAAACTATGTCAAAGACTTGAGCCGGCTGGGCAGGGACCTGAATAAAGTCATCATCGTGGATAATTCACCAGCATCGTACATTTTCCACCCAGACAATGCTGTACCTGTAGCCTCCTGGTTTGATGACATGTCCGACACCGAGCTGCTGGATCTGATCCCTTTCTTTGAGAGACTGAGTAAAGTGGATGACGTGTACGCTGTGCTGAAACAGCAAAGGACTAGCAGCTAACATGATACGTGGAGCAGCTTTCACTTTGGGGCCAGGGAGGCTGGTGGGTTCAGAGCGCCACTTCCCCGCTAACAGGATCGGCTGTCGGCTCGGTCCTCTTCACCTACCCAGAATTCCATTCACAGGATGATTGACAGAAAAGAAAACGAGCTGAATGCAACCTGGTATGGCCGATGGAACTGTGAAGGACTGCTTAAtggcacacacatatatataaaagaaaagaaaattttattgattttgttttaaaaaaatgttattcctTCTGTTTTTGTAACTTTTCCCCATTTTAAAGGTAAGGTAGATAGACGGAAGCCCTGTTTAAATGAACAGTGTGGATTAATGGTTTATTATCTCATGATGTTTTACTGGGGAAGACTTCTCTGGATGACTAGATGTGTGAAAAAGGACAGCTCTGACATTTTGACAAGTGGCCGTGTTTCACCtgttggactttttttttctgaatcggGGTGAAGATGATAAAATATCACCAGTCTGGCCTTGTGGATATTCAGTGCTATTAATATGCAGATGTTCAGTGTAATTGAAAGTCGTTACATTGAAATTATTGCaagattattaatcattttccTGCTGCCTGGGTGCCTTGATGAATCTGTATGAGAGAATCTGAGAGATGTGAGATTTTtagttgatgttttttttagtgtgctAAGGAATATTCTGTCTAGTTTgccaaatattacattttaaattgtaattttagaCCATATTCGAATATATGAATTATACAGTCACCAgtataaaaatttaaaagaaatgtgctttttgttgtgctttttactttttaatttagattttgaaAGAAGTAGGCACACTTTCTGTTGCTGATCAAAAAAACACAGTCTttcatataatacattttaataaatacagccTGTGCCAAGGTTTGGGCAGCCTGCAGTCATGGTTAGCAAAGTCAGTCATGATGTGAGGTGTGTAACAATGAGTTTTTAGAAGCTGTCAGTTAAACCCCTCTAAGACCTTGTGCTTACACTCAGTAATCATCAGTTTATCTTACCATCTgtataaagataaagaaagaggaaaGTACAGGGTATCAAATGTTATGTCATGATTTGTAAAGACATTgtcaatataaaacatatctcTCACAATATTTTGAAACTTAAGCAAATTGTATCAGTAACAGCAGATTTTAAACACTGCCATCCATACTCATCCATGCTAAGTACAGTGATTTGTACTCCAAATTTGCTGCACACCATCTAATTATCCAAATAATTAAGATGATTAATTATTCACTTGAATTATGCTTTTAACTGTGCATttctttagtgtttttaatactgATAATATCCACAATATGCTTCTAGAAGCATATTAAGCATCATGATAACAAAATGTACCACaatatgattaaataataatactgcCATATTTACACACTCATATCCACAATGCAGGGCAAAGCTGtaagaaaatatagaaaatagttttttttttttatacagtttctACAGGATGTTACTGAGTAACAGTAGTTCAGGGGAAGTGTGGAAGTCAAGATGAGATCTGGAAGACCCAACAGCTGCCAAATATCTGCTGAAAGCTCAGTCAGAGAGAGTGATGTTTGGTGCACTGTTTTGTTGTGCAGCATGGCTCGCACAGGctgtctaattattttttttacctgggtCTTTGATACAAACTGATTACAACAGCTAGCATTAAAATACTTAAACGTTCACTATTCACTACTGCAGGTGTTTAAAACCCTAGCTCTTTTTGTAGCTGTTGTAAAGTTGAATCTACATCACTTCCTAAAAGTCCTCCAGTTTGTGTAAAAGTTGTTTACCTGCGTGTTTTACACAACGAGCAGCTGAAACTAGGTGGTTTGCCAAAATGTCAGTGCTGTCTGAGGATAGGCATTCCTCAAACACCCAAGTAAGAATGCAACAGTGACTGTTAATCACACAGAAGAGTCTGCTGATGAGTTTAAACTGGACTTGAAGAGATGAA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224337 lncRNA upstream 268152 7247734 ~ 7247939 (+) True G165656
TU224329 lncRNA upstream 342731 7172780 ~ 7173360 (+) True G165648
TU224324 lncRNA upstream 431790 7084001 ~ 7084301 (+) True G165643
TU224126 lncRNA upstream 625321 6885848 ~ 6890770 (+) True G165530
TU224130 lncRNA upstream 764308 6751412 ~ 6751783 (+) True G165534
TU224418 lncRNA downstream 63566 7593647 ~ 7594184 (+) True G165718
TU224386 lncRNA downstream 64141 7594222 ~ 7594625 (+) True G165687
TU224490 lncRNA downstream 209414 7739495 ~ 7742228 (+) False LOC103036674
TU224523 lncRNA downstream 332916 7862997 ~ 7864489 (+) True G165787
TU224548 lncRNA downstream 432888 7962969 ~ 7963170 (+) True G165809
XM_022680654.1 mRNA upstream 25539 7487418 ~ 7490552 (+) True LOC103040445
XM_022680149.1 mRNA upstream 30742 7391202 ~ 7485349 (+) True LOC103040759
XM_022680147.1 mRNA upstream 139322 7303585 ~ 7376769 (+) True LOC103038369
XM_022680148.1 mRNA upstream 142141 7303586 ~ 7373950 (+) False LOC103038369
XM_015607003.2 mRNA upstream 397577 7110158 ~ 7118514 (+) True nr4a2
XM_022680655.1 mRNA downstream 146705 7676786 ~ 7742225 (+) True LOC103036674
XM_022680167.1 mRNA downstream 224782 7754863 ~ 7866094 (+) False LOC103036377
XM_022680166.1 mRNA downstream 224782 7754863 ~ 7866025 (+) False LOC103036377
XM_022680159.1 mRNA downstream 224783 7754864 ~ 7867603 (+) False LOC103036377
XM_022680161.1 mRNA downstream 224784 7754865 ~ 7868505 (+) False LOC103036377
TU224375 other upstream 86725 7385133 ~ 7429366 (+) False LOC103040759
XR_002651330.1 other upstream 1170688 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other upstream 1170688 6339995 ~ 6345403 (+) False wdr4
TU223975 other upstream 1278105 6160400 ~ 6237986 (+) False LOC111194881
TU223959 other upstream 1370122 6144937 ~ 6145969 (+) True G165406
XR_002651338.1 other downstream 499314 8029395 ~ 8034584 (+) True LOC111194887
TU224843 other downstream 1508161 9038242 ~ 9078728 (+) False G166015
TU224842 other downstream 1545239 9075320 ~ 9085850 (+) True G166015
TU224855 other downstream 1606880 9136961 ~ 9148559 (+) False LOC103024790
TU225038 other downstream 2297862 9827943 ~ 9837292 (+) True G166177

Expression Profile