RNA id: XM_022680156.1


Basic Information

Item Value
RNA id XM_022680156.1
length 2814
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC103036377
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 7754863 ~ 7868505 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTCTACTCTCCCATTATTTGACTGGCTGCAGGTATTGGTGTCTGCCTCcgtgcgtgcgtgtgcgtgttagcgcgcgcatgtgtgtgtgcgggaCTGTggatgagtgtgtatgtgtgtgtgtgtgtctgtgacagagagataaagagagagagaaagaggagcagCGTTTCATCTTCCCCCCCTCTGGCCTCCCCGTCTCCCTGCTCCCTGTCACTCCGTCCTTCCTTCCCTCCCGGACCACCCCGTCAGCGGCTGCGCCGGCCCGGACCCTCCACCCATCACCCCCTTTGACTCTCCTCACTCCACCGTCCCGCCTTGTCAACTGCAGAATCATCCcttcagaaacagaagaagaagaagaagaagaagaaggaggaagcCTCTACATAGATCTGCAAATccctttaaaagaaaagaaaagcagggCTTAGgtacAACTGCACTGGACAGCCTGAATTCTCCCCAGTTTCCTGGAAGTGTGACAGCACTAGGTCACATGACCTGGAAGAGAAAACCCAGGAGACCTTTTGGATCCCTTTCTGAATGGGCCAGTTATCAACCTGGAAAGAAGTCTAAAGGCTGATGTGCTGATCTGCACAGCGACAAAGCtgcgctctgtctctcttccctcctcctcctcctcttcctcttcctcttcctccacgCCAAGTCTGCCTAACCCTCGCCATTTATGCCCTGAGAGCCGCAAACTCCGGTGACTGGTTGGCTGCCAtaccatctctctcttcctgctcctGGGGATTTCCTGTCACGTGATCACActcctgcttctcctccaaTCCCAGAATGGAACCCGGCAAAGTGCAGTCAGAGGGCGGGCTGAATGTCACCCTCACCATCCGCCTCCTCATGCACGGAAAGGAAGTTGGAAGCATCATTGGAAAGAAAGGGGAAACTGTGAAGAAGATGCGTGAGGAAagCGCTGCTCGCATTAACATTTCGGAGGGGAACTGTCCAGAGAGAATCGTCACCATCACAGGACCCACAGATGCCATTTTTAAGGCTTTCGCCATGATTGCCTACAAGTTTGAAGAGGATATAATCAACTCCATGAGCAACAGCCCGGCCACCAGCAAGCCTCCCGTTACCCTCCGGCTGGTGGTCCCAGCCAGCCAGTGTGGCTCTCTCATCGGGAAGGGAGGCTCCAAGATCAAAGAGATGAGAGAGTCCACAGGAGCTCAGGTGCAGGTTGCTGGAGACATGCTGCCCAACTCCACAGAGCGCGCCGTGACAATCTCGGGCACCCCTGAAGCCATCATCCAATGTGTCAAACAGATATGTGTGGTCATGCTGGAGTCCCCACCGAAAGGTGCCACCATCCCTTACCGCCCAAAGCCCGCCTCCACCCCCGTCATTTTTTCAGGTGGCCAGGTAAGAGCCGACCCGCTGGCGGCGTCCGCAGCCAATCTCAGCCTTTTACTGCAGCACCAGCCACTGCCTGCTTACACAATTCAGGGACAATATGCCATTCCACATCCAGATCAGTTGACCAAGCTCCACCAGTTGGCTATGCAGCAAACCCCCTTTACCCCCCTTGGACAGACCACCCCTGCTTTCCCCGGTCTGGATGCCAGTCCCCCGGCCAGTACTCATGAACTCACCATTCCCAATGATCTAATAGGCTGCATAATCGGGCGCCAGGGAACCAAAATCAACGAGATCCGTCAGATGTCTGGAGCGCAGATCAAAATCGCTAACGCCATGGAAGGGTCATCGGAGCGCCAGATTACCATCACAGGAACCCCCGCCAACATCAGCCTCGCGCAGTACCTCATCAACGCAAGGTTCAGAGACGTGGCAGCCATGTGGAATGACCCCTCGTCAATGACTACATCCTGAAGCCCCCAAACTGCTCTCATTATCTGAAGCTAACAGCAGCTGTTTCCCTATTAACCTTATGTACCAGACTCCCTTAAAACTCCCCACCTCCCCTGGGCCTACTGTCCTTTATTGTGAACCACGAACCTCCAACAGTAGCTAAAGTGTGTATAGGCAGGCTActgtaaaaaatggaaaaaaaagaaaaactaaaaaaaaagtatgaaattTGAGGCAATACTGTGGTTTGATTTACTTCatgttatttagtgtttaattgcAGTGTTTCAGCATGCTGAATGATTAAGAATCTGCtgtgttcattatagttcattatttttaaaactgtttatatagtttataatttGTTTGTTAGATTAGAATATGATTCCTGATTCAGATTCAGTttgtgtgatttaaaaaaacaggagtccAATCCCGGACTAGATGATCAAGTGATGATCCACCCCAGAATGTCGTTCCAACAGCCTGGAACCCTCAgacaaaaactttaaatttcTTGATTGTTTTTTGCACATAAAATAGGAGTAAAATTGAAAATGGGTTTTACCTGTCATCTGGGGGAGGAGCAATACTTTCAAAAACCTTAGGATGGGAGGGATCACAAATTCTGTGATTGATCTATCAAGATTGATCTGTGTCAGAGAgggttaagaaaaaaataaagctaaaaaatgtattaaaaaatgtaaaatagaaaaatataaacaaacacacaattaaTGCTTTTGGTCAGGGAGGAGGAGTGATGTGAGAACATTCATGTGAGCATGTTATAAGAAGTGGTGGGAGGAGGGGGAGGCTAGACTTGGAGGATTTATTCCAATCAGAGCCTGATTAAACCCGACAAACTTCTTGAATGATTATTTTTGGATTACATGTGAATTGAAATGACTGCAGCAACATTGTGTTAATTAATAACTTCATttgatttaaagtttttttattctta

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K21444 PCBP3_4; poly(rC)-binding protein 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224490 lncRNA upstream 12637 7739495 ~ 7742228 (+) False LOC103036674
TU224386 lncRNA upstream 160240 7594222 ~ 7594625 (+) True G165687
TU224418 lncRNA upstream 160681 7593647 ~ 7594184 (+) True G165718
TU224387 lncRNA upstream 219793 7494641 ~ 7535072 (+) True G165688
TU224548 lncRNA downstream 95366 7962969 ~ 7963170 (+) True G165809
TU224556 lncRNA downstream 170282 8037885 ~ 8043080 (+) True G165814
TU224604 lncRNA downstream 246004 8113607 ~ 8113917 (+) True G165856
TU224649 lncRNA downstream 357760 8225363 ~ 8278604 (+) True G165882
TU224653 lncRNA downstream 373303 8240906 ~ 8242288 (+) True G165885
XM_022680655.1 mRNA upstream 12640 7676786 ~ 7742225 (+) True LOC103036674
XM_022680154.1 mRNA upstream 216785 7515820 ~ 7538080 (+) False LOC103040141
XM_022680155.1 mRNA upstream 224784 7495151 ~ 7530081 (+) False LOC103040141
XM_015607133.2 mRNA downstream 42405 7910008 ~ 7917217 (+) True LOC103036074
XM_022680168.1 mRNA downstream 161792 8029395 ~ 8034584 (+) False LOC111194887
XM_022680171.1 mRNA downstream 181492 8049095 ~ 8067885 (+) True LOC103039823
XM_007230432.2 mRNA downstream 215756 8083359 ~ 8109692 (+) True LOC103033948
XM_022680175.1 mRNA downstream 267455 8135058 ~ 8143255 (+) False LOC103039517
TU224375 other upstream 325499 7385133 ~ 7429366 (+) False LOC103040759
XR_002651330.1 other upstream 1409462 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other upstream 1409462 6339995 ~ 6345403 (+) False wdr4
TU223975 other upstream 1516879 6160400 ~ 6237986 (+) False LOC111194881
TU223959 other upstream 1608896 6144937 ~ 6145969 (+) True G165406
XR_002651338.1 other downstream 161792 8029395 ~ 8034584 (+) True LOC111194887
TU224843 other downstream 1170639 9038242 ~ 9078728 (+) False G166015
TU224842 other downstream 1207717 9075320 ~ 9085850 (+) True G166015
TU224855 other downstream 1269358 9136961 ~ 9148559 (+) False LOC103024790
TU225038 other downstream 1960340 9827943 ~ 9837292 (+) True G166177

Expression Profile