RNA id: XM_022680166.1


Basic Information

Item Value
RNA id XM_022680166.1
length 1733
RNA type mRNA
GC content 0.55
exon number 15
gene id LOC103036377
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 7754863 ~ 7868505 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACTCTCTACTCTCCCATTATTTGACTGGCTGCAGGTATTGGTGTCTGCCTCcgtgcgtgcgtgtgcgtgttagcgcgcgcatgtgtgtgtgcgggaCTGTggatgagtgtgtatgtgtgtgtgtgtgtctgtgacagagagataaagagagagagaaagaggagcagCGTTTCATCTTCCCCCCCTCTGGCCTCCCCGTCTCCCTGCTCCCTGTCACTCCGTCCTTCCTTCCCTCCCGGACCACCCCGTCAGCGGCTGCGCCGGCCCGGACCCTCCACCCATCACCCCCTTTGACTCTCCTCACTCCACCGTCCCGCCTTGTCAACTGCAGAATCATCCcttcagaaacagaagaagaagaagaagaagaagaaggaggaagcCTCTACATAGATCTGCAAATccctttaaaagaaaagaaaagcagggCTTAGgtacAACTGCACTGGACAGCCTGAATTCTCCCCAGTTTCCTGGAAGTGTGACAGCACTAGGTCACATGACCTGGAAGAGAAAACCCAGGAGACCTTTTGGATCCCTTTCTGAATGGGCCAGTTATCAACCTGGAAAGAAGTCTAAAGGCTGATGTGCTGATCTGCACAGCGACAAAGCtgcgctctgtctctcttccctcctcctcctcctcttcctcttcctcttcctccacgCCAAGTCTGCCTAACCCTCGCCATTTATGCCCTGAGAGCCGCAAACTCCGGTGACTGGTTGGCTGCCAtaccatctctctcttcctgctcctGGGGATTTCCTGTCACGTGATCACActcctgcttctcctccaaTCCCAGAATGGAACCCGGCAAAGTGCAGTCAGAGGGCGGGCTGAATGTCACCCTCACCATCCGCCTCCTCATGCACGGAAAGGAAGTTGGAAGCATCATTGGAAAGAAAGGGGAAACTGTGAAGAAGATGCGTGAGGAAagCGCTGCTCGCATTAACATTTCGGAGGGGAACTGTCCAGAGAGAATCGTCACCATCACAGGACCCACAGATGCCATTTTTAAGGCTTTCGCCATGATTGCCTACAAGTTTGAAGAGGATATAATCAACTCCATGAGCAACAGCCCGGCCACCAGCAAGCCTCCCGTTACCCTCCGGCTGGTGGTCCCAGCCAGCCAGTGTGGCTCTCTCATCGGGAAGGGAGGCTCCAAGATCAAAGAGATGAGAGAGTCCACAGGAGCTCAGGTGCAGGTTGCTGGAGACATGCTGCCCAACTCCACAGAGCGCGCCGTGACAATCTCGGGCACCCCTGAAGCCATCATCCAATGTGTCAAACAGATATGTGTGGTCATGCTGGAGTCCCCACCGAAAGGTGCCACCATCCCTTACCGCCCAAAGCCCGCCTCCACCCCCGTCATTTTTTCAGGTGGCCAGGTAAGAGCCGACCCGCTGGCGGCGTCCGCAGCCAATCTCAGCCTTTTACTGCAGCACCAGCCACTGCCTGCTTACACAATTCAGGGACAATATGCCATTCCACATCCAGATCAGTTGACCAAGCTCCACCAGTTGGCTATGCAGCAAACCCCCTTTACCCCCCTTGGACAGACCACCCCTGCTTTCCCCGGTCTGGATGCCAGTCCCCCGGCCAGTACTCATGAACTCACCATTCCCAATGATGCTGCATAATCGGGCGCCAGGGAACCAAAATCAACGAGATCCGTCAGATGTCTGGAGCGCAGATCAAAATCGCTAACGCCATGGAAGGGTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224490 lncRNA upstream 12635 7739495 ~ 7742228 (+) False LOC103036674
TU224386 lncRNA upstream 160238 7594222 ~ 7594625 (+) True G165687
TU224418 lncRNA upstream 160679 7593647 ~ 7594184 (+) True G165718
TU224387 lncRNA upstream 219791 7494641 ~ 7535072 (+) True G165688
TU224548 lncRNA downstream 96944 7962969 ~ 7963170 (+) True G165809
TU224556 lncRNA downstream 171860 8037885 ~ 8043080 (+) True G165814
TU224604 lncRNA downstream 247582 8113607 ~ 8113917 (+) True G165856
TU224649 lncRNA downstream 359338 8225363 ~ 8278604 (+) True G165882
TU224653 lncRNA downstream 374881 8240906 ~ 8242288 (+) True G165885
XM_022680655.1 mRNA upstream 12638 7676786 ~ 7742225 (+) True LOC103036674
XM_022680154.1 mRNA upstream 216783 7515820 ~ 7538080 (+) False LOC103040141
XM_022680155.1 mRNA upstream 224782 7495151 ~ 7530081 (+) False LOC103040141
XM_015607133.2 mRNA downstream 43983 7910008 ~ 7917217 (+) True LOC103036074
XM_022680168.1 mRNA downstream 163370 8029395 ~ 8034584 (+) False LOC111194887
XM_022680171.1 mRNA downstream 183070 8049095 ~ 8067885 (+) True LOC103039823
XM_007230432.2 mRNA downstream 217334 8083359 ~ 8109692 (+) True LOC103033948
XM_022680175.1 mRNA downstream 269033 8135058 ~ 8143255 (+) False LOC103039517
TU224375 other upstream 325497 7385133 ~ 7429366 (+) False LOC103040759
XR_002651330.1 other upstream 1409460 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other upstream 1409460 6339995 ~ 6345403 (+) False wdr4
TU223975 other upstream 1516877 6160400 ~ 6237986 (+) False LOC111194881
TU223959 other upstream 1608894 6144937 ~ 6145969 (+) True G165406
XR_002651338.1 other downstream 163370 8029395 ~ 8034584 (+) True LOC111194887
TU224843 other downstream 1172217 9038242 ~ 9078728 (+) False G166015
TU224842 other downstream 1209295 9075320 ~ 9085850 (+) True G166015
TU224855 other downstream 1270936 9136961 ~ 9148559 (+) False LOC103024790
TU225038 other downstream 1961918 9827943 ~ 9837292 (+) True G166177

Expression Profile