RNA id: XR_002651338.1


Basic Information

Item Value
RNA id XR_002651338.1
length 2137
RNA type misc_RNA
GC content 0.36
exon number 6
gene id LOC111194887
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 8029395 ~ 8034584 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGTTTCATGTCGAAAGCGAAAGCAGCTGTGGTTCGGAGCAGCTGTGGTTCGGAGCAGCTGGAGGACAGAGGAGAAAGCGGGCGAGATCATCAGCGAATATAAAAGaataAATGGATTTCAAAGCCATTGTCAAGCGTAACAAACCAGATCTGATCAAATGGCTGCACGGGAATTATATAGTTCTACAATATGTAGATTCACAGGAAATTATATCATCCACTGAATATAAAAACCTGAAGATAATTGACAATTATGATGAAAAGAATACAATGCTCCTGGATATGATCTGGGATAAAGGACAGGACTCTTGCCggaattttttaaatgtactgaaGAAGGGTGATGTGAACGAGTCAAGCCCAGATCTCCAGAGATGGATATCCACTGTGGACACCTCTGATACCTCAGcaacaaGTGTCCAGACTCCAGTGGCCGGTGTCTCAACCTCAGGTAGGGTTGTGAATATTCAAGCCGATGGTGCCAGTCATGTTGTTGCCCCCCTAATATTTAACTCAAATACGGGTGGCATCAATATAACTGTGaataaaccaaacaaataaGGATTGATGAAAAACGTCACATAATCAATgCAAACAGCTCCACCTCTCCTGCTGGGAATCAGACAATTGCAGATAAAAAGGAGTTCCTGAAGACAAAACGaagtgaattaataaataaagtcaaaAATGTGGATGCAATTGCAGATGACCTCAACCTGACAAATGAAATGAGATCTATTGTGGAAGCTCAACCAACTGACCATGCCAAAATGAGGAAAGTGCTGGAATTTACAAACAGCACCAAAGCAACTGAGCTTCTGATCGATGCCTTGTGGAAGCATGCAGGTGACATCATGGAGGACCTGACCAGTGAAGCCTAATGTGGCGTATAAACAGCAGGTCCTGTGAGTTATGAAATGACCAAATAAGGCATtatgttagatttttttagtttgattacatgattttttacattcctTTTATTAACATGGATGAGGGGAGCATTATTAAGATATTCTGTAGATTGATAGCATGCATTGATTATGTTGAGGGACTAATTTTTACACCAAAATTTGTTGTTTTACCCATTTGTTCAGGGACATTCACAGATGCTGAATTTAGATTTTATACTTCCCTTAATACTGCCTGACTTCAGAGCACTTGAGCCTTATTTATTGCTGTAGTTGAAGGTTTTATATGAATGGTCAGttctttttaatgaaaatgtcatttttataaCAAACATTTACTTGTAATTACCTGTTATCAGACATTAACTTTGGGGAGTGTTAGGGATGTATTTAGAATGATAAATACATGAAACAAAACCTCAAATACTATACAAATCAACACAATACTATATTATAGAATgaatcatggctaaattgagactgttacagtagttttgTGGATTGCCTCATTGTTTCTATACCACCTACATTAGATTTTGATTTATTTCCAGTGAACTCCTAGACACATTTGAGATTTTTGACTCCTAGGAGTtacatgtaataataataaaaaaatcaaagtagAACAAGAATATATGCTTATCTCAGGCCTAATTACATAATGTAAAATGGCATGTGGGATGCTTACAACATACATAAAATGGACAGCCTGACCAGTGAAGCTTAGTGTGGCATTTAAAACATCTGTTACTTCAGGGATAGCAGGTCCTGTAAATTATGAAATGATCAAATTAGAATCATGTGAGATTATTTTTCTCCGACTCTAAtgttattttggtgtgttttataCATTATTCTTATATTACCTACATTCCACagacattgttttttatatattttttaaattaactacTTATGGATCAGGAGAACATTACCAAGGCAGCTTCTATTTAAATAGATAGCATAGAAGCATCTGTTAAAATGTGCAGAACTTAATTTTTATACAAAGCTTGTTCAGgggtatagttttttttgtttttgtttttttacctcTGTATGCTTATGTCTTACATTGACTTTGGAATGtatttttatcatcatttttacaaTAAGCCTGTGGCAATTACCTGTGTTATTAACAAACGTTAATTGTGATTGGCGGGAATGTGGGAGAGCCATGGAAAAACAAGCTTTATTGAATGGTAAATAAATTTATCAAAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224548 lncRNA upstream 66225 7962969 ~ 7963170 (+) True G165809
TU224523 lncRNA upstream 164906 7862997 ~ 7864489 (+) True G165787
TU224490 lncRNA upstream 287167 7739495 ~ 7742228 (+) False LOC103036674
TU224386 lncRNA upstream 434770 7594222 ~ 7594625 (+) True G165687
TU224418 lncRNA upstream 435211 7593647 ~ 7594184 (+) True G165718
TU224556 lncRNA downstream 3301 8037885 ~ 8043080 (+) True G165814
TU224604 lncRNA downstream 79023 8113607 ~ 8113917 (+) True G165856
TU224649 lncRNA downstream 190779 8225363 ~ 8278604 (+) True G165882
TU224653 lncRNA downstream 206322 8240906 ~ 8242288 (+) True G165885
TU224749 lncRNA downstream 305965 8340549 ~ 8437352 (+) True G165942
XM_015607133.2 mRNA upstream 112178 7910008 ~ 7917217 (+) True LOC103036074
XM_022680161.1 mRNA upstream 160890 7754865 ~ 7868505 (+) False LOC103036377
XM_022680160.1 mRNA upstream 160890 7754866 ~ 7868505 (+) False LOC103036377
XM_022680164.1 mRNA upstream 160890 7754866 ~ 7868505 (+) False LOC103036377
XM_022680165.1 mRNA upstream 160890 7754866 ~ 7868505 (+) False LOC103036377
XM_022680171.1 mRNA downstream 14511 8049095 ~ 8067885 (+) True LOC103039823
XM_007230432.2 mRNA downstream 48775 8083359 ~ 8109692 (+) True LOC103033948
XM_022680175.1 mRNA downstream 100474 8135058 ~ 8143255 (+) False LOC103039517
XM_022680174.1 mRNA downstream 100477 8135061 ~ 8143255 (+) True LOC103039517
XM_022680173.1 mRNA downstream 100481 8135065 ~ 8143255 (+) False LOC103039517
TU224375 other upstream 600029 7385133 ~ 7429366 (+) False LOC103040759
XR_002651330.1 other upstream 1683992 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other upstream 1683992 6339995 ~ 6345403 (+) False wdr4
TU223975 other upstream 1791409 6160400 ~ 6237986 (+) False LOC111194881
TU223959 other upstream 1883426 6144937 ~ 6145969 (+) True G165406
TU224843 other downstream 1003658 9038242 ~ 9078728 (+) False G166015
TU224842 other downstream 1040736 9075320 ~ 9085850 (+) True G166015
TU224855 other downstream 1102377 9136961 ~ 9148559 (+) False LOC103024790
TU225038 other downstream 1793359 9827943 ~ 9837292 (+) True G166177
TU225193 other downstream 2392682 10427266 ~ 10429912 (+) True G166294

Expression Profile