RNA id: XR_002651320.1


Basic Information

Item Value
RNA id XR_002651320.1
length 807
lncRNA type inter_gene
GC content 0.36
exon number 4
gene id LOC111194876
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 5747321 ~ 5762851 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATGGAAGCTGCTGGTTTACCCTGAGCTCTACAGACGGCAAAAGTGAGACCATCTTTATCCTTTTCCAGCCAGCCAGTCAGAGTCAGACGGTCTAAAGGATGATCAGAGAGAGACTTTTTAACAAGTTGTTAAAGGCAGGGTCGCTTGTGGACACAGAGATAGAACAGTTCTTCTCTCACAGGAAGTAACACTTCAAATCTGCATCATGTAGAGAAATGTAGCTGCATAGCTTTGCTGGGTATATGGGAGCATTTCACTTCAAAGTCTAATCAGTACCGAAATCAGGACTGCATTACCAGTAAATAGGTCTGGACAGCAGTCAGTGGAATTTCCTGTCTTTTGCCGGTGACGTAACTGCTGAAGGAAATTTTTCATTATGGAATTGAAATTGTCCAATATAATCTGCCCATGCCTTAGATGAAGTGAGCAGTCATGTGATCATGGTTCTTCTTTACTTTATGGTATTTACCAactgctttaaatatattcctcatactgtactgtaattatttttttattttatctttctatttaatatatgtaggcttgtgttttttttatgtttttttatctttcctTGGAGCTTTAGTTAATGCACTAAAAGAATAAGAGGATTGCAGGTCTACATATTAATTGTATGCTCTGTCACTGTGCACTGCAAGCGCCTTTAAAATCAAACATATATTTCTTGTATGTGCAAAATAAGCCTGCTGTTTTTGCACAACACAGACTTTAAAGTCAGGCTAAGAAAGTACTtaatttagacttttttttccatctcAGTTTAATCaacttattttagttaa

Function

GO: NA

KEGG:

id description
ko04320 Dorso-ventral axis formation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651321.1 lncRNA upstream 44 5744902 ~ 5747277 (+) True LOC111194877
TU223738 lncRNA upstream 17332 5712680 ~ 5729989 (+) True G165273
TU223741 lncRNA upstream 27347 5719045 ~ 5719974 (+) True G165276
TU223697 lncRNA upstream 98085 5611312 ~ 5649236 (+) True G165238
TU223687 lncRNA upstream 162203 5583527 ~ 5585118 (+) True G165229
TU223802 lncRNA downstream 102615 5865466 ~ 5868000 (+) True G165316
TU223811 lncRNA downstream 109390 5872241 ~ 5931151 (+) True G165323
TU223812 lncRNA downstream 109390 5872241 ~ 5931151 (+) False G165323
TU223816 lncRNA downstream 114573 5877424 ~ 5878740 (+) True G165326
TU223852 lncRNA downstream 235176 5998027 ~ 6002247 (+) False G165343
XM_022679998.1 mRNA upstream 108383 5628989 ~ 5638938 (+) True btla
XM_007253221.3 mRNA upstream 310089 5423935 ~ 5437232 (+) True LOC103047200
XM_022680099.1 mRNA upstream 310089 5423935 ~ 5437232 (+) False LOC103047200
XM_007253222.3 mRNA upstream 310089 5423935 ~ 5437232 (+) False LOC103047200
XM_007253224.3 mRNA upstream 442212 5300599 ~ 5305109 (+) True LOC103021436
XM_022680107.1 mRNA downstream 39040 5801891 ~ 5834662 (+) True maats1
XM_022680108.1 mRNA downstream 72630 5835481 ~ 5862907 (+) True nr1i2
XM_022680112.1 mRNA downstream 354513 6117364 ~ 6123051 (+) True LOC107196936
XM_022680114.1 mRNA downstream 354513 6117364 ~ 6123051 (+) False LOC107196936
XM_022680113.1 mRNA downstream 354513 6117364 ~ 6123051 (+) False LOC107196936
TU222840 other upstream 3254330 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 3909234 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 3912687 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 4266587 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 5175128 538279 ~ 572193 (+) True G164126
TU223959 other downstream 382086 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 397549 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 577144 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 577144 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 1622282 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile