RNA id: TU21173


Basic Information

Item Value
RNA id TU21173
length 258
lncRNA type intronic
GC content 0.34
exon number 2
gene id G15660
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 493270 ~ 493638 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCACATACATCTACCAAAGAACCAATAAACCAATGAACCAGCCCTGTCTATCCATCCCCATACATCTACCAAAGAACCAATAAACCAATGAACTAGCCCTGTCTATCCATCCCCATACATCTACCAAAGAACCAATAAACCAGTGAACCAGCCCTGTCTCTCCATCCTCATACCATTGAACCAGTTATGCAGTCCTATCTAGTCAACTTCACATCACTACCACTAATTCAGGGAATGGGAATGGGGAGACCAGGCTG

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0030217 T cell differentiation biological_process
GO:0046649 lymphocyte activation biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21171 lncRNA upstream 6816 459789 ~ 486454 (+) True G15659
TU21121 lncRNA upstream 47610 443166 ~ 445660 (+) True G15636
TU21093 lncRNA upstream 101097 318133 ~ 392173 (+) True G15612
TU21026 lncRNA upstream 216089 246855 ~ 277181 (+) True G15566
TU21024 lncRNA upstream 265080 225524 ~ 228190 (+) True G15565
XR_002649636.1 lncRNA downstream 90072 583710 ~ 588307 (+) True LOC111191745
XR_002651095.1 lncRNA downstream 100017 593655 ~ 597730 (+) True LOC111194483
XR_002651092.1 lncRNA downstream 119399 613037 ~ 615239 (+) True LOC111194479
TU21270 lncRNA downstream 192435 686073 ~ 705802 (+) True G15724
TU21302 lncRNA downstream 916295 1409933 ~ 1412569 (+) True G15748
XM_022678667.1 mRNA upstream 25186 448393 ~ 468084 (+) True LOC107197531
XM_022678676.1 mRNA upstream 25186 460501 ~ 468084 (+) False LOC107197531
XM_022678644.1 mRNA upstream 53706 430383 ~ 439564 (+) True LOC111194470
XM_007258085.3 mRNA upstream 182406 303636 ~ 310864 (+) True LOC103030708
XM_007258087.3 mRNA upstream 372089 102308 ~ 121181 (+) True LOC103031762
XM_022678704.1 mRNA downstream 15934 509572 ~ 524138 (+) True LOC103028849
XM_022678694.1 mRNA downstream 57405 551043 ~ 558402 (+) True LOC103023152
XM_022667504.1 mRNA downstream 106790 600428 ~ 609429 (+) True LOC111191737
XM_022678737.1 mRNA downstream 828884 1322522 ~ 1340800 (+) True LOC103025578
XM_022678744.1 mRNA downstream 828884 1322522 ~ 1340800 (+) False LOC103025578
XR_002651096.1 other downstream 98590 592228 ~ 593633 (+) True LOC111194487
XR_002651100.1 other downstream 828878 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other downstream 828878 1322516 ~ 1332281 (+) False LOC103025578
TU21431 other downstream 1187521 1681159 ~ 1682022 (+) True G15839
TU22663 other downstream 5679118 6172756 ~ 6177884 (+) False LOC103025913

Expression Profile