RNA id: TU21340


Basic Information

Item Value
RNA id TU21340
length 427
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G15771
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 1454327 ~ 1457428 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAAAACATACATATCTGCTCTAATGTAAAGCAGCATTACACCAACATCTTTAggtgcagtaaacacacagttaCTCACGGCTGCATTCTGCATCAGCGCACAGCTTCTTGTCAGAAAGTTTAGGCATCTGCCTGCCAGCCTGTGTGGCTATGGGCAGCAGGCCACACAGCAACAGGATCAGTGACCAGTTAGCGTAGCCTCTCTCCATTGCCATGGCTCTGCTGCTCAATCTATGAAGGTTCTGCTGGAGTAAAGACTttttttcctGTAACGTTGCCTCAGACTTTTTCAGAAATGTTTTGTTGACACCAATGACACATATACGTGTATGTGTCTGTAAACCAAACCCAGAAGCTGTCCTTAGGTTAACAGTATATCTCAGGATCTCAGGTGGAAACCGAGAATAATGGTGCCATTCATGACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21305 lncRNA upstream 33519 1415182 ~ 1420808 (+) True G15749
TU21302 lncRNA upstream 41758 1409933 ~ 1412569 (+) True G15748
TU21270 lncRNA upstream 748525 686073 ~ 705802 (+) True G15724
XR_002651092.1 lncRNA upstream 839088 613037 ~ 615239 (+) True LOC111194479
XR_002651095.1 lncRNA upstream 856597 593655 ~ 597730 (+) True LOC111194483
TU21393 lncRNA downstream 70627 1528055 ~ 1529400 (+) False fdxacb1
TU21400 lncRNA downstream 124085 1581513 ~ 1581946 (+) True G15813
TU21406 lncRNA downstream 129350 1586778 ~ 1636251 (+) True G15818
TU21420 lncRNA downstream 166498 1623926 ~ 1624377 (+) True G15831
TU21437 lncRNA downstream 272402 1729830 ~ 1730349 (+) True G15845
XM_007245217.2 mRNA upstream 12218 1437806 ~ 1442109 (+) True cryab
XM_022678737.1 mRNA upstream 113527 1322522 ~ 1340800 (+) True LOC103025578
XM_022678744.1 mRNA upstream 113527 1322522 ~ 1340800 (+) False LOC103025578
XM_022667504.1 mRNA upstream 844898 600428 ~ 609429 (+) True LOC111191737
XM_022678694.1 mRNA upstream 895925 551043 ~ 558402 (+) True LOC103023152
XM_007245220.3 mRNA downstream 42 1457470 ~ 1469889 (+) True LOC103029064
XM_007245222.3 mRNA downstream 42 1457470 ~ 1469889 (+) False LOC103029064
XM_007245225.3 mRNA downstream 40280 1497708 ~ 1500545 (+) True ufc1
XM_007245230.3 mRNA downstream 59069 1516497 ~ 1529417 (+) True fdxacb1
XM_007245229.3 mRNA downstream 59758 1517186 ~ 1529417 (+) False fdxacb1
XR_002651100.1 other upstream 121536 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other upstream 122046 1322516 ~ 1332281 (+) False LOC103025578
XR_002651096.1 other upstream 860694 592228 ~ 593633 (+) True LOC111194487
TU21431 other downstream 223731 1681159 ~ 1682022 (+) True G15839
TU22663 other downstream 4715328 6172756 ~ 6177884 (+) False LOC103025913
TU22722 other downstream 5074968 6532396 ~ 6532868 (+) True G16820
trnat-ugu other downstream 5193277 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 5194552 6651980 ~ 6652052 (+) True trnat-ugu_1

Expression Profile