RNA id: TU21420


Basic Information

Item Value
RNA id TU21420
length 423
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id G15831
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 1623926 ~ 1624377 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcagacttggtgatcCGGTGCTTGGCCAGTTTCACCACGGCGAAGTTTCCTTTGCCCAGAgtccgctctatatcataaaatcccaCGCGGACCGGCGCCCGCTGACCGGCTTTGGGCTCGGCCGGGTCGGCCATGGCCGTGGCTCTCCTCCCGGTGGCCCTTTCAGCGGAGAGTCGGAGAGTTCTCCAGCCCAGCGGAGCTCAGGAGCTCATACACCTGTGAGAGCTCTCCACAGAGCAGGGGGGAGGGGGGcggagcgagagagagagagagagaataaagagagaaagagagagagagagagagagagagagaggaggagggcggcctctctctctcactctgtctgacCGAACCACGCTTCACATGCTTCGGCTGAAAGTTCACAACACCGGCGCTGCTGCCAGGCTGAGAGCTCCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21400 lncRNA upstream 41980 1581513 ~ 1581946 (+) True G15813
TU21393 lncRNA upstream 94526 1528055 ~ 1529400 (+) False fdxacb1
TU21340 lncRNA upstream 166498 1454327 ~ 1457428 (+) True G15771
TU21305 lncRNA upstream 203118 1415182 ~ 1420808 (+) True G15749
TU21302 lncRNA upstream 211357 1409933 ~ 1412569 (+) True G15748
TU21437 lncRNA downstream 105453 1729830 ~ 1730349 (+) True G15845
TU21511 lncRNA downstream 204407 1828784 ~ 1829016 (+) True G15890
TU21513 lncRNA downstream 206164 1830541 ~ 1830742 (+) True G15892
TU21547 lncRNA downstream 370048 1994425 ~ 1994863 (+) True G15920
TU21559 lncRNA downstream 449162 2073539 ~ 2073838 (+) True G15932
XM_007245234.2 mRNA upstream 44428 1559849 ~ 1579498 (+) True LOC103032850
XM_022667524.1 mRNA upstream 74169 1534029 ~ 1549757 (+) True alg9
XM_007245230.3 mRNA upstream 94509 1516497 ~ 1529417 (+) True fdxacb1
XM_007245229.3 mRNA upstream 94509 1517186 ~ 1529417 (+) False fdxacb1
XM_007245225.3 mRNA upstream 123381 1497708 ~ 1500545 (+) True ufc1
XM_007245239.3 mRNA downstream 40219 1664596 ~ 1669346 (+) True btg4
XM_015604788.2 mRNA downstream 526253 2150630 ~ 2171204 (+) True nrgn
XM_007245243.3 mRNA downstream 563009 2187386 ~ 2203190 (+) True LOC103036563
XM_007245245.3 mRNA downstream 585268 2209645 ~ 2220704 (+) True ccdc15
XM_022678968.1 mRNA downstream 585272 2209649 ~ 2220704 (+) False ccdc15
XR_002651100.1 other upstream 291135 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other upstream 291645 1322516 ~ 1332281 (+) False LOC103025578
XR_002651096.1 other upstream 1030293 592228 ~ 593633 (+) True LOC111194487
TU21431 other downstream 56782 1681159 ~ 1682022 (+) True G15839
TU22663 other downstream 4548379 6172756 ~ 6177884 (+) False LOC103025913
TU22722 other downstream 4908019 6532396 ~ 6532868 (+) True G16820
trnat-ugu other downstream 5026328 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 5027603 6651980 ~ 6652052 (+) True trnat-ugu_1

Expression Profile