RNA id: TU21567


Basic Information

Item Value
RNA id TU21567
length 278
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G15940
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 2102272 ~ 2102549 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagcaagtctttgtgatgtaccaagagccacggtatccagggaaatgtcagcataccaccaagaaggatgaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcaggtgctaacccggattgtatccaaaaaacataaaaccacggctgcccaaatcacagcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaggacaataaattattgtggtctaaaaccaggtgtttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21559 lncRNA upstream 28434 2073539 ~ 2073838 (+) True G15932
TU21547 lncRNA upstream 107409 1994425 ~ 1994863 (+) True G15920
TU21513 lncRNA upstream 271530 1830541 ~ 1830742 (+) True G15892
TU21511 lncRNA upstream 273256 1828784 ~ 1829016 (+) True G15890
TU21437 lncRNA upstream 371923 1729830 ~ 1730349 (+) True G15845
TU21574 lncRNA downstream 27330 2129879 ~ 2130280 (+) True G15947
TU21577 lncRNA downstream 48123 2150672 ~ 2171207 (+) False nrgn
TU21591 lncRNA downstream 82305 2184854 ~ 2185076 (+) True G15963
TU21631 lncRNA downstream 228273 2330822 ~ 2333256 (+) True G15995
TU21781 lncRNA downstream 584748 2687297 ~ 2688041 (+) True G16113
XM_007245239.3 mRNA upstream 432926 1664596 ~ 1669346 (+) True btg4
XM_007245234.2 mRNA upstream 522774 1559849 ~ 1579498 (+) True LOC103032850
XM_022667524.1 mRNA upstream 552515 1534029 ~ 1549757 (+) True alg9
XM_007245230.3 mRNA upstream 572855 1516497 ~ 1529417 (+) True fdxacb1
XM_015604788.2 mRNA downstream 48081 2150630 ~ 2171204 (+) True nrgn
XM_007245243.3 mRNA downstream 84837 2187386 ~ 2203190 (+) True LOC103036563
XM_007245245.3 mRNA downstream 107096 2209645 ~ 2220704 (+) True ccdc15
XM_022678968.1 mRNA downstream 107100 2209649 ~ 2220704 (+) False ccdc15
XM_007245246.3 mRNA downstream 121487 2224036 ~ 2240887 (+) True slc37a2
TU21431 other upstream 420250 1681159 ~ 1682022 (+) True G15839
XR_002651100.1 other upstream 769481 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other upstream 769991 1322516 ~ 1332281 (+) False LOC103025578
XR_002651096.1 other upstream 1508639 592228 ~ 593633 (+) True LOC111194487
TU22663 other downstream 4070207 6172756 ~ 6177884 (+) False LOC103025913
TU22722 other downstream 4429847 6532396 ~ 6532868 (+) True G16820
trnat-ugu other downstream 4548156 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 4549431 6651980 ~ 6652052 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 4551035 6653584 ~ 6653656 (+) True trnat-ugu_2

Expression Profile