RNA id: XM_015604788.2


Basic Information

Item Value
RNA id XM_015604788.2
length 821
RNA type mRNA
GC content 0.46
exon number 3
gene id nrgn
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 2150630 ~ 2171207 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGCGGAGGAGGAGGTGGGGACTGAGTGtggagagcagcagcagagccatCAGAGAGCAGGAGCAGCTTTATTCACTACAGCTCTCACCTGAGCACGAGTTCACTCCATCTCTCACACCTTCATCTCCAGCATACCTCCTCCCCACGACGCCATGGACTGTCGAAAAGAGGGGTGCAGTCAGCCACAGGAAGAGGATATCATGGACATCCCTCTGGATGACCCAGCAGCCAACAAGGCTGCTACTAAGATTCAGGCAGGCTTTCGGGGCCACATGACCAGGAAGAAGATGAAGGATGACAAGCCCAGAGAAGAGAAACAACGAGAGCAGAAGTAGCTTCAGAGGACGTCCCACCGCCACTGCTGCCGCCCTGATGGTTTTTCGTTCCCTGAGCATGGCGGAGCACACACATCACTGCAATAACCAGAGGTCTTTTgttgaagagaaaaaaaaacttcagtgtATGATATATATACAAGTGTAAACTTAGGGGAAACAAAAGTCTGCCCTCAGATCAACGGCCTTTCACTCCTCCTCTGCTTCGGATAGAGTCTGGACGTTAGTCTGTGGCACACAATAGCCGTTCAGCATGTTAAATAGCTTCTGTGGAaagtcagttttattttccagtgtttttttagatGATAAAATTATTTGTGGTTAACTGGAGGGaatttgttcattttatgtctttttttctctgctcaCTTCCCTGGCTGTTCTTACAATATGGAAgtatgcatttattacaaaacgGGCTATTGCCTTTTCTAGTGTGACTTCTTTTGTTTCTGCTTGTTTAATAAAGCAAAATGGGTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21574 lncRNA upstream 20350 2129879 ~ 2130280 (+) True G15947
TU21567 lncRNA upstream 48081 2102272 ~ 2102549 (+) True G15940
TU21559 lncRNA upstream 76792 2073539 ~ 2073838 (+) True G15932
TU21547 lncRNA upstream 155767 1994425 ~ 1994863 (+) True G15920
TU21513 lncRNA upstream 319888 1830541 ~ 1830742 (+) True G15892
TU21591 lncRNA downstream 13650 2184854 ~ 2185076 (+) True G15963
TU21631 lncRNA downstream 159618 2330822 ~ 2333256 (+) True G15995
TU21781 lncRNA downstream 516093 2687297 ~ 2688041 (+) True G16113
TU21845 lncRNA downstream 735724 2906928 ~ 2907676 (+) True G16141
TU21910 lncRNA downstream 844218 3015422 ~ 3016421 (+) True G16204
XM_007245239.3 mRNA upstream 481284 1664596 ~ 1669346 (+) True btg4
XM_007245234.2 mRNA upstream 571132 1559849 ~ 1579498 (+) True LOC103032850
XM_022667524.1 mRNA upstream 600873 1534029 ~ 1549757 (+) True alg9
XM_007245230.3 mRNA upstream 621213 1516497 ~ 1529417 (+) True fdxacb1
XM_007245229.3 mRNA upstream 621213 1517186 ~ 1529417 (+) False fdxacb1
XM_007245243.3 mRNA downstream 16182 2187386 ~ 2203190 (+) True LOC103036563
XM_007245245.3 mRNA downstream 38441 2209645 ~ 2220704 (+) True ccdc15
XM_022678968.1 mRNA downstream 38445 2209649 ~ 2220704 (+) False ccdc15
XM_007245246.3 mRNA downstream 52832 2224036 ~ 2240887 (+) True slc37a2
XM_007245247.3 mRNA downstream 73257 2244461 ~ 2259339 (+) True LOC103037703
TU21431 other upstream 468608 1681159 ~ 1682022 (+) True G15839
XR_002651100.1 other upstream 817839 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other upstream 818349 1322516 ~ 1332281 (+) False LOC103025578
XR_002651096.1 other upstream 1556997 592228 ~ 593633 (+) True LOC111194487
TU22663 other downstream 4001552 6172756 ~ 6177884 (+) False LOC103025913
TU22722 other downstream 4361192 6532396 ~ 6532868 (+) True G16820
trnat-ugu other downstream 4479501 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 4480776 6651980 ~ 6652052 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 4482380 6653584 ~ 6653656 (+) True trnat-ugu_2

Expression Profile