RNA id: TU21591


Basic Information

Item Value
RNA id TU21591
length 223
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G15963
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 2184854 ~ 2185076 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGTTCAGATTAATTTTCCaatatattcaaattttctgaattCAAATAGCTATtcgtccactgccacgcaccataattacactttggatgcccgtttccacagagatccatgtaaacacaacagcgagtggaaatggaggagctactgaatgtgatgtcatgtgactgagaaagccaaaaaaaaaaactcactggtcctcctgttttttttttcagttgcagt

Function

GO:

id name namespace
GO:0005778 peroxisomal membrane cellular_component
GO:0044438 obsolete microbody part cellular_component
GO:0044439 obsolete peroxisomal part cellular_component
GO:0031903 microbody membrane cellular_component
GO:0008170 N-methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21577 lncRNA upstream 13647 2150672 ~ 2171207 (+) False nrgn
TU21574 lncRNA upstream 54574 2129879 ~ 2130280 (+) True G15947
TU21567 lncRNA upstream 82305 2102272 ~ 2102549 (+) True G15940
TU21559 lncRNA upstream 111016 2073539 ~ 2073838 (+) True G15932
TU21547 lncRNA upstream 189991 1994425 ~ 1994863 (+) True G15920
TU21631 lncRNA downstream 145746 2330822 ~ 2333256 (+) True G15995
TU21781 lncRNA downstream 502221 2687297 ~ 2688041 (+) True G16113
TU21845 lncRNA downstream 721852 2906928 ~ 2907676 (+) True G16141
TU21910 lncRNA downstream 830346 3015422 ~ 3016421 (+) True G16204
TU21953 lncRNA downstream 1005336 3190412 ~ 3191314 (+) False G16230
XM_015604788.2 mRNA upstream 13650 2150630 ~ 2171204 (+) True nrgn
XM_007245239.3 mRNA upstream 515508 1664596 ~ 1669346 (+) True btg4
XM_007245234.2 mRNA upstream 605356 1559849 ~ 1579498 (+) True LOC103032850
XM_022667524.1 mRNA upstream 635097 1534029 ~ 1549757 (+) True alg9
XM_007245230.3 mRNA upstream 655437 1516497 ~ 1529417 (+) True fdxacb1
XM_007245243.3 mRNA downstream 2310 2187386 ~ 2203190 (+) True LOC103036563
XM_007245245.3 mRNA downstream 24569 2209645 ~ 2220704 (+) True ccdc15
XM_022678968.1 mRNA downstream 24573 2209649 ~ 2220704 (+) False ccdc15
XM_007245246.3 mRNA downstream 38960 2224036 ~ 2240887 (+) True slc37a2
XM_007245247.3 mRNA downstream 59385 2244461 ~ 2259339 (+) True LOC103037703
TU21431 other upstream 502832 1681159 ~ 1682022 (+) True G15839
XR_002651100.1 other upstream 852063 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other upstream 852573 1322516 ~ 1332281 (+) False LOC103025578
XR_002651096.1 other upstream 1591221 592228 ~ 593633 (+) True LOC111194487
TU22663 other downstream 3987680 6172756 ~ 6177884 (+) False LOC103025913
TU22722 other downstream 4347320 6532396 ~ 6532868 (+) True G16820
trnat-ugu other downstream 4465629 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 4466904 6651980 ~ 6652052 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 4468508 6653584 ~ 6653656 (+) True trnat-ugu_2

Expression Profile