RNA id: TU21631


Basic Information

Item Value
RNA id TU21631
length 2394
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G15995
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 2330822 ~ 2333256 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGTATATGGCCCTCAGTAAATTCATAATTTGCATTATACACTAGTTAGTTCATGGTCCCACTGTGAGGTCCTGTTTTTGCAAGTGTTTTTAGGGAGGGATGTTACCGTGTACATATAAGTGAGATCTCAGACTTTCCAGGGTCAACTGAAAAGTTATCAAGAGCAAACGTCTTAGTCTGTGTACAGCTTTTCTCACATTGAGAAACATCCTTACACGTTCATTTATTATGTAATTAAGTATTTTCTTTTGACCCTTCccatctttttttaagtaaaaataacagGTTGCAATCACTTCTCAGATCTGAACAAACACCATGCAGAAAGCAGTGACCAGGATGAGAACTCATGTTCACTGTGTGTTTccagtttattgaataaatttGCAACATATAAAGTGGTTCTGGTGTTGATCTTTTACTGATAAACCCCATGTAACATCTCTGCATATCCATACTTTTCTGAAATAATGTGATCAAATGAAGACAGTGTGCAAGATTTCTTTCCATTTTTGAACAATATCAGTTCAGTCAAATTTAATAGAATCTATTAGAGCTATTCATATTTCCAGAAAGCTGAGAAGACCATATTAATAGTgctcaataatataataaaatataatacctCATGAATGTctagacaaaataaaaatacagattacattaatatttaaggATACCTTGCAgtcgtttattttttttttcttcctttgttttttttttttttttagtagtttctgttaaaataatacaatgacTCGTATGATGTAGAAAGCAGAAGggggaaaaacacaaacaaggaATTAGGTCTCTAAGAGATGCAGTGTTGGTCATAATTATACAATTTTACACTTAAAATAAGACCTTTCATGGTCTGTTAAGTCTGtgcatttttttctgaagctTTTCCTCTTCATATAACTTCATTCCCAAATTCCAGAAAAAATATCCATGTCATAATCCGATAAGACTTcaggttgggttgagttggctTGTACAATAGCAGTATGTAGCGCCTCAACCCACAATGatgagtcttggtttctcttGGTCATTGCTAATATGCCATAGAGGTTTTTCAGTAGCTTCATTCAAAAGAATGTGGTAGACGAtgataaatacagttttaaaagctTAAACTTAGGCTTCTGGTTGGTTGAGAGGAGATAGATATGTCCCTTCAGAGATCTTCAAGGTGATGTGCtccaaaatgcaaaatgtaacAGCTTTCATACTGATGTTTACGCTGTAACAGCAGTACGATATACAACACCGTGGAAATGATTCCGCTTTCTACCCTTTCCTCAGAGAAGCTCAATGCTTCTTTATGTAACAGTTCAGTCAGAAGTGCTAAAAGTTGCTTACAGTGAATGAAAGTGAATACACAGCTTCCATTCATTGTTAGCCATGCTAGCATATCTGGTTAAAGGAATTAGCTGCTCTGCCCTCATCAATTTCATCAATTGACTAACTTAATATATGGTGCTTTACAGTCAACTTCTGGATAAAGTCCTCATTTAGACCTAATGCTAATTTGAGTGTCAGTAACGCATTACTGTTCTCCTtaaccacaagttaacattcATACCCATATCCATATACAATAAGGAATGAACTAGTAGGCTGTGGTATTAGGCAGTCCTTATGAAGGACAGTTCATGCATTAGATTTtgtccatttgttttttttttttgtttgtttgtttttttttataaatgaggcCTAAGGCTTAGCTAAGGCCTAAAATACCTCATAAAACTACACCTGGTATCTTTATTGGCTTTAATATCAAACCTCATCTCATCCAGTCATAATCTTCACggggggtggctgTCATGTCGTATATCATCTACCCTCAAGTGAAATATCTCAGTAGGTAAAAGTGGGAAGTTCCAGGCTAGGCTGTAGTTTATCCTCAGTGATCTCCTGCCATTATCCTGTCTTCCTTTTGTTTCTGTCCAAACCGCTGACCCATAGGAGGCATTGCGTTCTGAGTTCATAGGAGAGAATTTCAAAAAGGTGGACTGTTCATGCAGACAGGAAGTGGAATGTTCAATAGTCACAGCTCCAGTACGCAGCTGGCAGATGCAGTGGTCAAGGAATATCTTCATGTCCTCATTTATAATCATcttcatcaatcatcatcatatttttttcctccctgtCCCAAAGGTGCTTGGAAAATGTTTTTAGCGATTAGCtggagtgtgtgggtgtttgtAGGCTGGGTATAAGAGGGAGGGCTGATCAACGCCTGTGTATGACGTCCGATATGCTTTAATATTCATGCATGTTGAGCTTGGAGTATAAAGACCACAGCATTTTCCCAAAATCTCTGCATCTGCTGCAATTCCAGCATGAAGTCCACAGCAGTGGAAACACTAGCTTTTatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21591 lncRNA upstream 145746 2184854 ~ 2185076 (+) True G15963
TU21577 lncRNA upstream 159615 2150672 ~ 2171207 (+) False nrgn
TU21574 lncRNA upstream 200542 2129879 ~ 2130280 (+) True G15947
TU21567 lncRNA upstream 228273 2102272 ~ 2102549 (+) True G15940
TU21559 lncRNA upstream 256984 2073539 ~ 2073838 (+) True G15932
TU21781 lncRNA downstream 354041 2687297 ~ 2688041 (+) True G16113
TU21845 lncRNA downstream 573672 2906928 ~ 2907676 (+) True G16141
TU21910 lncRNA downstream 682166 3015422 ~ 3016421 (+) True G16204
TU21953 lncRNA downstream 857156 3190412 ~ 3191314 (+) False G16230
TU21954 lncRNA downstream 857156 3190412 ~ 3191141 (+) True G16230
XM_007245269.3 mRNA upstream 281 2325547 ~ 2330541 (+) True ccdc84
XM_015604802.2 mRNA upstream 5271 2320857 ~ 2325551 (+) True LOC103045030
XM_015604798.2 mRNA upstream 12455 2315209 ~ 2318367 (+) True upk2
XM_007245276.3 mRNA upstream 16522 2298591 ~ 2314300 (+) True pou2f3
XM_022679023.1 mRNA upstream 16522 2299160 ~ 2314300 (+) False pou2f3
XM_015604814.2 mRNA downstream 230547 2563803 ~ 2569599 (+) True derl2
XM_022667529.1 mRNA downstream 240195 2573451 ~ 2576652 (+) True LOC111191739
XM_022679130.1 mRNA downstream 256323 2589579 ~ 2616863 (+) True rabep1
XM_022679136.1 mRNA downstream 256323 2589579 ~ 2616863 (+) False rabep1
XM_022679143.1 mRNA downstream 260208 2593464 ~ 2616863 (+) False rabep1
TU21431 other upstream 648800 1681159 ~ 1682022 (+) True G15839
XR_002651100.1 other upstream 998031 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other upstream 998541 1322516 ~ 1332281 (+) False LOC103025578
XR_002651096.1 other upstream 1737189 592228 ~ 593633 (+) True LOC111194487
TU22663 other downstream 3839500 6172756 ~ 6177884 (+) False LOC103025913
TU22722 other downstream 4199140 6532396 ~ 6532868 (+) True G16820
trnat-ugu other downstream 4317449 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 4318724 6651980 ~ 6652052 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 4320328 6653584 ~ 6653656 (+) True trnat-ugu_2

Expression Profile