RNA id: TU22696


Basic Information

Item Value
RNA id TU22696
length 1164
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G16799
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6357564 ~ 6360468 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gccggagctgaggctgtagcagcgggagctgctggtgctggagctgaggctgtagcagcgggagctgctggtgctggagctgaggctgtagcagcgggagctgctggtgctggagctgaggctgtagcagcgggagctgctggtgctggagctgaggctgtagcagcgggagctgctggtgcttgagctggggcagcgggtgctgctggtgcttgagctggggcagcgggtgctgctggtgcctgagctggggcagcgggtgctgctcgagcaggcgcggcgggtgcagcttgagcaggcgcggtgggtgcagcttgagcaggcgcggcgatCCTAGGAGCTCGTGACCTGGGAGTAGGCACAGGAGCAGAGGTGGGTAGCCCAGGCACGTGAACTGGGGAGgcagcgggcacagagtcagaggcggccggagccgcgggcacagagtcagaggcggccggagccgcgggcagcgctgaaacagaggcggccggagccgcgggcagcgctgaaacagaggcggtgggtcctgctggcGTGAGCGCGGCAGGCACCGCGGgtacagagtcagaggcggccggagccgcgggcacagagtcagaggcagccggagccgcgggcagcgctgaaacagaggcggccggagccgcgggcagcgctgaaacagaggcggtgggtcctgctggcGTGAGCGCGGCAGGCACCGCTGACGTGGAGGCGGCTGGCACCGCGGGCTTGGGGGCGGCTGGCACCGCTGGCGAAAAAGCCGCTTCAGCGGGAGCtgagagtgcggctgccgccAAGACCCGGACTGGAGCCGCAGATTCAGCAGTGGGCGTGGTTGTAAACaccggaccggagcttgcttcCAGAGCCGGAGTCGAGGatctggaagccggccgggctggtgAGCTGGAAGCCTGCCGAGCTGGAGTGttggaagtcggccgggctggagagctggaagccggccgcgctggagtgctggaagtcggccgggctggagagctggaagccggtcgagctggagtgctggaagtcggccgggctggagagctggaagccggccgagctggagagctggaagccggccgagctGGAGAGTGCGGTggagctagcaggctagctagcttagctggagcttcagagagcggcgctgccgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22673 lncRNA upstream 124468 6231265 ~ 6233096 (+) True G16779
TU22667 lncRNA upstream 140947 6214586 ~ 6216617 (+) True G16777
TU22643 lncRNA upstream 257214 6091736 ~ 6100350 (+) True G16755
TU22644 lncRNA upstream 257214 6092844 ~ 6100350 (+) False G16755
TU22618 lncRNA upstream 349516 6002303 ~ 6008048 (+) True G16739
XR_002651238.1 lncRNA downstream 55394 6415862 ~ 6438882 (+) True LOC111194764
TU22726 lncRNA downstream 176411 6536879 ~ 6538980 (+) True G16824
TU22730 lncRNA downstream 214069 6574537 ~ 6574776 (+) True G16828
TU22731 lncRNA downstream 214478 6574946 ~ 6575225 (+) True G16829
TU22733 lncRNA downstream 216523 6576991 ~ 6577305 (+) True G16831
XM_022679550.1 mRNA upstream 33669 6293072 ~ 6323895 (+) True erp44
XM_022679541.1 mRNA upstream 128105 6185481 ~ 6229459 (+) False tex10
XM_022679537.1 mRNA upstream 128105 6185482 ~ 6229459 (+) True tex10
XM_007229447.3 mRNA upstream 184665 6168760 ~ 6172899 (+) True LOC103025913
XM_022679499.1 mRNA upstream 277513 6049397 ~ 6080051 (+) True LOC103023602
XM_007229458.3 mRNA downstream 183807 6544275 ~ 6552001 (+) True alg2
XM_007229461.3 mRNA downstream 232999 6593467 ~ 6603875 (+) True frrs1l
XM_007229460.3 mRNA downstream 246517 6606985 ~ 6641935 (+) True tmem245
XM_015604598.2 mRNA downstream 246518 6606986 ~ 6641935 (+) False tmem245
XM_007229462.3 mRNA downstream 557590 6918058 ~ 6922362 (+) False ino80c
TU22663 other upstream 179680 6172756 ~ 6177884 (+) False LOC103025913
TU21431 other upstream 4675542 1681159 ~ 1682022 (+) True G15839
XR_002651100.1 other upstream 5024773 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other upstream 5025283 1322516 ~ 1332281 (+) False LOC103025578
XR_002651096.1 other upstream 5763931 592228 ~ 593633 (+) True LOC111194487
TU22722 other downstream 171928 6532396 ~ 6532868 (+) True G16820
trnat-ugu other downstream 290237 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 291512 6651980 ~ 6652052 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 293116 6653584 ~ 6653656 (+) True trnat-ugu_2
trnat-ugu_3 other downstream 294405 6654873 ~ 6654945 (+) True trnat-ugu_3

Expression Profile