RNA id: TU22722


Basic Information

Item Value
RNA id TU22722
length 473
RNA type TUCP
GC content 0.38
exon number 1
gene id G16820
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6532396 ~ 6532868 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gatacaaccgtgctgggtctcatcaccaaaggcgacgagtcagcatacagagaggaggtgcagcggctgacagactggtgtacagtcaacaaccttcacctgaatgtggacaagacaaaggaaatggttgttgacttcaggagagcacaacacacccactctccactcaacatcgacgggtcctctgtggagattgttaagagcaccaagttccttggtgtccacttagcagataacctcacctggaccctgaacaccagctctacagccaagaaagcccagcagcgtctctacttcctccggaagctgagaaaggcccgtctccctccacccatcctcacactcttctatagagggaccattgagagcatcctgagcagctgcatcactgcctggtttgggacctgcaccgtctctgaccgcaagaccctccagcatattgtgaggacagctgagaggatcatcggcgtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651238.1 lncRNA upstream 93514 6415862 ~ 6438882 (+) True LOC111194764
TU22696 lncRNA upstream 171928 6357564 ~ 6360468 (+) True G16799
TU22673 lncRNA upstream 299300 6231265 ~ 6233096 (+) True G16779
TU22667 lncRNA upstream 315779 6214586 ~ 6216617 (+) True G16777
TU22643 lncRNA upstream 432046 6091736 ~ 6100350 (+) True G16755
TU22726 lncRNA downstream 4011 6536879 ~ 6538980 (+) True G16824
TU22730 lncRNA downstream 41669 6574537 ~ 6574776 (+) True G16828
TU22731 lncRNA downstream 42078 6574946 ~ 6575225 (+) True G16829
TU22733 lncRNA downstream 44123 6576991 ~ 6577305 (+) True G16831
TU22716 lncRNA downstream 72399 6605267 ~ 6643077 (+) True G16815
XM_022679550.1 mRNA upstream 208501 6293072 ~ 6323895 (+) True erp44
XM_022679541.1 mRNA upstream 302937 6185481 ~ 6229459 (+) False tex10
XM_022679537.1 mRNA upstream 302937 6185482 ~ 6229459 (+) True tex10
XM_007229447.3 mRNA upstream 359497 6168760 ~ 6172899 (+) True LOC103025913
XM_022679499.1 mRNA upstream 452345 6049397 ~ 6080051 (+) True LOC103023602
XM_007229458.3 mRNA downstream 11407 6544275 ~ 6552001 (+) True alg2
XM_007229461.3 mRNA downstream 60599 6593467 ~ 6603875 (+) True frrs1l
XM_007229460.3 mRNA downstream 74117 6606985 ~ 6641935 (+) True tmem245
XM_015604598.2 mRNA downstream 74118 6606986 ~ 6641935 (+) False tmem245
XM_007229462.3 mRNA downstream 385190 6918058 ~ 6922362 (+) False ino80c
TU22663 other upstream 354512 6172756 ~ 6177884 (+) False LOC103025913
TU21431 other upstream 4850374 1681159 ~ 1682022 (+) True G15839
XR_002651100.1 other upstream 5199605 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other upstream 5200115 1322516 ~ 1332281 (+) False LOC103025578
XR_002651096.1 other upstream 5938763 592228 ~ 593633 (+) True LOC111194487
trnat-ugu other downstream 117837 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 119112 6651980 ~ 6652052 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 120716 6653584 ~ 6653656 (+) True trnat-ugu_2
trnat-ugu_3 other downstream 122005 6654873 ~ 6654945 (+) True trnat-ugu_3
trnat-ugu_4 other downstream 123688 6656556 ~ 6656628 (+) True trnat-ugu_4

Expression Profile