RNA id: TU22731


Basic Information

Item Value
RNA id TU22731
length 280
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G16829
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6574946 ~ 6575225 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcagaggtctagctaaaggaatacggttttcacaccacacacactgcactcattCTGCTGAGGAAATTATAACTATTTTTACTAACAAGTACATctttacacattactgtaggtagaaagaaaagaaaatactaaggaaaatgtatcaaatatactatgtatacaaaatacaaaaacctgcaaagacaaaacaaaatacattacagtatgtaaaaaaacagtcaagcatcacaaatgcaatacagtaacattctgactactctgtgtcactcccctatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22730 lncRNA upstream 170 6574537 ~ 6574776 (+) True G16828
TU22726 lncRNA upstream 35966 6536879 ~ 6538980 (+) True G16824
XR_002651238.1 lncRNA upstream 136064 6415862 ~ 6438882 (+) True LOC111194764
TU22696 lncRNA upstream 214478 6357564 ~ 6360468 (+) True G16799
TU22673 lncRNA upstream 341850 6231265 ~ 6233096 (+) True G16779
TU22733 lncRNA downstream 1766 6576991 ~ 6577305 (+) True G16831
TU22716 lncRNA downstream 30042 6605267 ~ 6643077 (+) True G16815
TU22712 lncRNA downstream 67959 6643184 ~ 6645997 (+) True G16811
TU22740 lncRNA downstream 99490 6674715 ~ 6684107 (+) True G16838
TU22742 lncRNA downstream 114495 6689720 ~ 6800136 (+) True G16839
XM_007229458.3 mRNA upstream 22945 6544275 ~ 6552001 (+) True alg2
XM_022679550.1 mRNA upstream 251051 6293072 ~ 6323895 (+) True erp44
XM_022679541.1 mRNA upstream 345487 6185481 ~ 6229459 (+) False tex10
XM_022679537.1 mRNA upstream 345487 6185482 ~ 6229459 (+) True tex10
XM_007229447.3 mRNA upstream 402047 6168760 ~ 6172899 (+) True LOC103025913
XM_007229461.3 mRNA downstream 18242 6593467 ~ 6603875 (+) True frrs1l
XM_007229460.3 mRNA downstream 31760 6606985 ~ 6641935 (+) True tmem245
XM_015604598.2 mRNA downstream 31761 6606986 ~ 6641935 (+) False tmem245
XM_007229462.3 mRNA downstream 342833 6918058 ~ 6922362 (+) False ino80c
XM_022679630.1 mRNA downstream 342833 6918058 ~ 6921842 (+) True ino80c
TU22722 other upstream 42078 6532396 ~ 6532868 (+) True G16820
TU22663 other upstream 397062 6172756 ~ 6177884 (+) False LOC103025913
TU21431 other upstream 4892924 1681159 ~ 1682022 (+) True G15839
XR_002651100.1 other upstream 5242155 1322516 ~ 1332791 (+) False LOC103025578
trnat-ugu other downstream 75480 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 76755 6651980 ~ 6652052 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 78359 6653584 ~ 6653656 (+) True trnat-ugu_2
trnat-ugu_3 other downstream 79648 6654873 ~ 6654945 (+) True trnat-ugu_3
trnat-ugu_4 other downstream 81331 6656556 ~ 6656628 (+) True trnat-ugu_4

Expression Profile