RNA id: TU22875


Basic Information

Item Value
RNA id TU22875
length 2666
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G16939
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6670069 ~ 6672756 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaaaatactaatgcgggaggacggcgggaaagaggagtaaaatacggtaggttcccggccaaaacgggagacttgacaggtatgaacaTGGCTCCAGCATCCTGCTTCAACTTCTTTCTTAAACACTCTTTAATAAAGTGTTCTGAACTTACTTTTGTGTCCATGTTATCTGTAATATCAAATCagacataaaataaatgttaacatGACTGTTAAATGCTAAACACAGTCCAGCTAAGCATGCAGGTGTACACTCTTATAAGACCAGGCTAGCCACGCTAGGATATTAACTAGCGTTAGCTCGCTAAGCAGGCTAATCTAAAGAGCTGTGGTTTGACTAAAATTACCCCTCACTTGTTTTGACATTAAACTGAGAAAATGACCAATTCAGGGTTATTCAAGTCATAGCATCTTAGATAAGGTTCATCAGGCTAGATTAGCTGCCTGGGTAATATTATAATGGATagccttagctagctagcaacatAAGCTAGCACAGTAACATCTTAAAATGAAATGGTGATCTCTACTGATTTAGTGAATTTATTTGATCTTTGGGAAAACTATGGAAGGTTTGACCTTcataagattttttattttgtattattattttgaggAAGAAGATGAAGTGCATTTGGGAATGTAGCAGTTGGAAATGTAGCATTGCTAGCACCCAGCTAAACAATGCTACTTCCGTCCCCCACAGCCTCGGTTTGCTAGACAATGGTGACGTAGATGAATAAAGtgtattattttagatttcctattcatgcatttcattgactctctttttttttgtttgttttctgatgCTCTCTGAAGTGATGTCAGTATAATTTGCTGTTCATCTCTGCTTAGTGCTCTGATTTTAATAGAATATTGAGGCtgcaaatattgaaatattaaatattgaaatattgagtGTTGCTGATCACTGATTAAGCCTCACAGCACCGGCGGCATCTACTTCACCACAGCTTTACAACTGAGTTTCCTTTCcgcaaaataaatataatatgtgTTAAATATAACACATTTAACCAGAGATGCAGcacctcttctttttttatgaaaaataagttaaatcttttttgtttgttgtggtTCAAAGCTAGCAAATTACCTATGCTCTGAATAgctctaaatcacattaaattgtCTGCTAAAATGTTGTGTTAGCATCTCATAGCTAGCTAGTTTTTGATCAGTGTTCACAGCAGTAGCTACTGAATACAGGCTGCATTAACTTTAAATACAATACTGCCATACACTATTTGGTATAAAATGACCTGTAATAAATCACTCACACTAATTACATTAACAGAAATTTTGAACAGGGGTGACCaaactttttcatgccactgtatatatatatatatatatagaccgacagagagggagagggagttgtttttgtcttttatttttctgtatgtatgtattctCACTACTTGTTTGGTGTCTGTAATGAGGTGGTCATATAGTGCTAAGATTCAGACTGGCCCAGCACTGGGCTCATCCTGACGAGTTGCCTTCCTCTGAATTGAAGCCTTCTGGCTCATAATCAACTCTAATCCATGAGCACATGAGTGATTGTGTTAGAAGAGATGAATTCAGTAATGTGTGGtcttatcatttatcatttacagATTCAAGGGCTTAGGCCTGCTGtacgtgtgtgagagagaacgTGTATggattatatgtgtgtgtgtatgtgtgtatatgtgtgtgtgtatgtggataGCGATGGGGTGGGGTTAATTTGTTttaaggtctttttttttatatactctaCATCATTACTGCTATTGCTGTCATGTGCATGTGGTTTCCTATATTTGAAGTCATttgttaacacattttttttttgtttttttgttttattttttaacctttGCGAATCGTGTGAAGGCTGAAAGAGATTTCACTTGGTATCGGAATTCTTTGTGGAATTCTTTTACGTTTCCTGTCCATGCATTTCactgacttgtttttttttgtgctgttttctGAGGTGATGTCAGTATATAATGTGCTGCTGTTCACCTCTGGTTAGTGCTCTGATTTTAATGGGGGCTGCAAATAAACAGAATGCTGCTGAGCACTGATTAGTGTGGGGGTGAAAGAAAGAATAATCTAGTGGCCCCACCCCCTTCACTCCCCTtttcttcctcccctctcaccCTCTGTGACTCAGAATATCGGAATAAAGGACAAATGGAAAGATTTCCCTTGGAATACGGAATACACAGCACGAAGGAattcacttcttttttttttttttttcgagtgAAGGAATTGACTCCCTTATCTGTGAATGGCAGGACAAGCTTCAAAGTCAGAGAGGGACATCAGATAGACCTGTCCATCATCATCGTCGCACATCCAAGCCACGAACAGACGGCTAGAGTTTACAGAGTTTTCCCTTCAGTCTGATGGTGACCAGGTGTCGTCTATACagagctgtgtatgtgtatgtgcgCGTTGGTGTGAGGAAACGAGTGAAAGCAGCATGCAAGTATAAAGTATGGGTGTTTTTGTCGTCTTTTGTTTTCCCcctttcgtttttttttgttggctgACTGTGGGTGTGGCCTGATGATGGACAGGTCAGGACACTTGGAGCTGATCCACAGGCTGGAGGAATAAATGGAAAGTTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22853 lncRNA downstream 24075 6643203 ~ 6645994 (-) True G16921
TU22854 lncRNA downstream 26982 6641147 ~ 6643087 (-) True G16922
TU22858 lncRNA downstream 92753 6576924 ~ 6577316 (-) True G16926
TU22857 lncRNA downstream 94753 6574844 ~ 6575316 (-) True G16925
TU22848 lncRNA downstream 121643 6545343 ~ 6548426 (-) True G16919
TU22889 lncRNA upstream 102817 6775573 ~ 6783231 (-) True G16951
TU22901 lncRNA upstream 226455 6899211 ~ 6899480 (-) True G16962
TU22904 lncRNA upstream 245440 6918196 ~ 6918657 (-) True G16965
TU23065 lncRNA upstream 323642 6996398 ~ 7001156 (-) True G17086
TU23073 lncRNA upstream 339247 7012003 ~ 7015844 (-) True G17093
XM_015604595.2 mRNA downstream 125794 6534859 ~ 6544275 (-) True sec61b
XM_022679574.1 mRNA downstream 258648 6373166 ~ 6411421 (-) False nr4a3
XM_022679571.1 mRNA downstream 258650 6368118 ~ 6411419 (-) False nr4a3
XM_022679618.1 mRNA upstream 2320 6675076 ~ 6896820 (-) True galnt1
XM_022679620.1 mRNA upstream 7043 6679799 ~ 6896820 (-) False galnt1
XM_022679643.1 mRNA upstream 345201 7017957 ~ 7046918 (-) True cdh17
XM_007236504.2 mRNA upstream 384676 7057432 ~ 7065913 (-) True LOC103045397
XM_007236506.3 mRNA upstream 403047 7075803 ~ 7099361 (-) False rad54b
TU22846 other downstream 126754 6534961 ~ 6543315 (-) False sec61b
TU22791 other downstream 559869 6106906 ~ 6110200 (-) False LOC103024654
TU22788 other downstream 569754 6083120 ~ 6100315 (-) True glipr2
trnat-ugu_7 other upstream 250311 6923067 ~ 6923139 (-) True trnat-ugu_7
trnat-ugu_8 other upstream 250487 6923243 ~ 6923315 (-) True trnat-ugu_8
trnat-ugu_9 other upstream 250665 6923421 ~ 6923493 (-) True trnat-ugu_9
trnat-ugu_10 other upstream 250843 6923599 ~ 6923671 (-) True trnat-ugu_10
trnat-ugu_11 other upstream 252372 6925128 ~ 6925200 (-) True trnat-ugu_11

Expression Profile