RNA id: TU22912


Basic Information

Item Value
RNA id TU22912
length 249
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G16968
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6926771 ~ 6927019 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGTGCTCTAACCTCTGAGCTATGGAGCCAAGCCTTTTGAAAACACTGGTCTTGGGGTTTAAACCAGACAACTTTGCGGtcccaaaataaaaacataatcttTTTTCAACACAACTGATCTCAAAAGCACCTTAAAGGCCCCAGCGTGAATTGAATTCGCGAACCCTGGTTTACAAGACCAGTGCTATGGAGCCCAGTCTCTTTAAACCCCTTGTCCTGGGTTTTTAACCAGACAACCTTTCGGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22749 lncRNA upstream 24860 6901222 ~ 6901911 (+) True G16845
TU22742 lncRNA upstream 126635 6689720 ~ 6800136 (+) True G16839
TU22740 lncRNA upstream 242664 6674715 ~ 6684107 (+) True G16838
TU22712 lncRNA upstream 280774 6643184 ~ 6645997 (+) True G16811
TU22716 lncRNA upstream 283694 6605267 ~ 6643077 (+) True G16815
TU22916 lncRNA downstream 21051 6948070 ~ 7049298 (+) True G16969
TU22914 lncRNA downstream 77107 7004126 ~ 7020232 (+) False G16969
TU23037 lncRNA downstream 410412 7337431 ~ 7339982 (+) True G17062
TU23046 lncRNA downstream 424599 7351618 ~ 7355186 (+) True G17070
TU23167 lncRNA downstream 501989 7429008 ~ 7429319 (+) False LOC103032995
XM_007229462.3 mRNA upstream 4409 6918058 ~ 6922362 (+) False ino80c
XM_022679630.1 mRNA upstream 4929 6918058 ~ 6921842 (+) True ino80c
XM_007229460.3 mRNA upstream 284836 6606985 ~ 6641935 (+) True tmem245
XM_015604598.2 mRNA upstream 284836 6606986 ~ 6641935 (+) False tmem245
XM_007229461.3 mRNA upstream 322896 6593467 ~ 6603875 (+) True frrs1l
XM_007236503.3 mRNA downstream 64884 6991903 ~ 7001192 (+) False pdp1
XM_022679639.1 mRNA downstream 64933 6991952 ~ 7001192 (+) False pdp1
XM_015602247.2 mRNA downstream 64970 6991989 ~ 7001192 (+) True pdp1
XM_007236502.3 mRNA downstream 64986 6992005 ~ 7001192 (+) False pdp1
XM_022679656.1 mRNA downstream 174562 7101581 ~ 7111945 (+) True LOC103046513
trnat-ugu_6 other upstream 258878 6667821 ~ 6667893 (+) True trnat-ugu_6
trnat-ugu_5 other upstream 267298 6659401 ~ 6659473 (+) True trnat-ugu_5
trnat-ugu_4 other upstream 270143 6656556 ~ 6656628 (+) True trnat-ugu_4
trnat-ugu_3 other upstream 271826 6654873 ~ 6654945 (+) True trnat-ugu_3
trnat-ugu_2 other upstream 273115 6653584 ~ 6653656 (+) True trnat-ugu_2
TU23483 other downstream 1748600 8675619 ~ 8716787 (+) True G17414
TU23546 other downstream 1989567 8916586 ~ 8921656 (+) True G17443
TU23528 other downstream 1990956 8917975 ~ 8921656 (+) False G17443
TU23538 other downstream 2005688 8932707 ~ 8950159 (+) False G17443
TU23933 other downstream 3354205 10281224 ~ 10281976 (+) True G17745

Expression Profile