RNA id: TU23046


Basic Information

Item Value
RNA id TU23046
length 297
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G17070
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7351618 ~ 7355186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTAGGATATTTATCTAGTAAAATAAACCAGTCATCATAAAAATCTCTCTGGATTTTTGCTTCTCTCTCTGGTAGAAGCTGCATGTCTTTCTTCTCCAGAATTATGACTTGCTTCTGTTCCTTCCTCACTTCCTCCACTCTGATCTTCTGTTCATCTATCTTCTCTTCAATCACTGTAATATCCATACTGACAACTGCTCCTTCAGcaatcttcttcttctgctccaGCTGCCTTTTCCTCTGTAGCTCTTTTATTCTCAGTGCttcctcctctttcttctttctttccagAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23037 lncRNA upstream 11636 7337431 ~ 7339982 (+) True G17062
TU22916 lncRNA upstream 302320 6948070 ~ 7049298 (+) True G16969
TU22914 lncRNA upstream 331386 7004126 ~ 7020232 (+) False G16969
TU22912 lncRNA upstream 424599 6926771 ~ 6927019 (+) True G16968
TU22749 lncRNA upstream 449707 6901222 ~ 6901911 (+) True G16845
TU23167 lncRNA downstream 73822 7429008 ~ 7429319 (+) False LOC103032995
TU23172 lncRNA downstream 80715 7435901 ~ 7436615 (+) True G17180
TU23206 lncRNA downstream 277726 7632912 ~ 7658380 (+) True G17204
TU23207 lncRNA downstream 277726 7632912 ~ 7692401 (+) False G17204
TU23209 lncRNA downstream 339132 7694318 ~ 7704025 (+) True G17206
XM_007236521.3 mRNA upstream 17944 7327338 ~ 7333674 (+) True LOC103023753
XM_007236519.3 mRNA upstream 27875 7311302 ~ 7323743 (+) True LOC103022811
XM_007236515.3 mRNA upstream 44533 7299671 ~ 7307085 (+) True LOC103022302
XM_007236512.3 mRNA upstream 178861 7142368 ~ 7172757 (+) True esrp1
XM_022679716.1 mRNA downstream 26964 7382150 ~ 7418932 (+) True megf8
XM_007232449.3 mRNA downstream 67385 7422571 ~ 7427666 (+) False LOC103032995
XM_022679726.1 mRNA downstream 68946 7424132 ~ 7429391 (+) True LOC103032995
XM_007232448.3 mRNA downstream 173891 7529077 ~ 7595962 (+) True LOC103032681
XM_022679735.1 mRNA downstream 181737 7536923 ~ 7595962 (+) False LOC103032681
trnat-ugu_6 other upstream 683725 6667821 ~ 6667893 (+) True trnat-ugu_6
trnat-ugu_5 other upstream 692145 6659401 ~ 6659473 (+) True trnat-ugu_5
trnat-ugu_4 other upstream 694990 6656556 ~ 6656628 (+) True trnat-ugu_4
trnat-ugu_3 other upstream 696673 6654873 ~ 6654945 (+) True trnat-ugu_3
trnat-ugu_2 other upstream 697962 6653584 ~ 6653656 (+) True trnat-ugu_2
TU23483 other downstream 1320433 8675619 ~ 8716787 (+) True G17414
TU23546 other downstream 1561400 8916586 ~ 8921656 (+) True G17443
TU23528 other downstream 1562789 8917975 ~ 8921656 (+) False G17443
TU23538 other downstream 1577521 8932707 ~ 8950159 (+) False G17443
TU23933 other downstream 2926038 10281224 ~ 10281976 (+) True G17745

Expression Profile