RNA id: TU23109


Basic Information

Item Value
RNA id TU23109
length 2321
lncRNA type intronic
GC content 0.42
exon number 3
gene id G17123
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7206012 ~ 7210744 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgagagtgtgtgagagtgtgtgtgtattcgcTGTATAGCAGCTCAGCCGTTTGTCTGACTTTGAGAGTTTGGCATCCTCAGGCAGTGGCACGCTGAAAGTCACTGAGCTCATTCTAGTAAGGCCGCTGTTTATCTAAGCAGATCACATGACCCTGTGCTGCGCCTGGTAGCAATGTGTGTGGCTGAAATACCCCCTGAGGGTTTTAAGGCTCTCATATTCTTTTACACTAGGGGTTCCCAATCCTACTCCTGGCCACCTAGGCATTCCTGTGTTTCCCCTGCACCTGACCCAGCCCACGAGGAGCCTGATAATTAGTTAATGAGTTCAATCAAGTGTGCAGGAGGAGACAAAGCACAAAAATGTGCCTGGTGCGGGGTTGCCAGGACTGGGATTGGGAACTGTACAGAGACTGCTACATGGGCAGGCACCAGCTGCTCCGAGAGAACACAGAACAGATCAGAAAAATAAGAGCTAATTAATTGAACCTGCTAAGAATGCTGGGAAGCTCTATCCCTGCTCCATCCGCAGCACTTGAAAATATTGGTATGCTTATTAGAAAAGCATCTCAGTGAGCTACAGTGGCATATAAAGTGTTGGGCAGCCCTGATTAAAGTGTGTATCTGACCTCcaaaagataataaataaacaatgcttttcaatatttatattaagcaagattagtttattatttttgttttgtttagttttagagTGACTAAAGGAAAGGAGCATCATCAAAACATTTGATGATAAAATATGAACTCTTTTTACAAAGGTCTCAGGCCTCAACTAGCTTGTTAAAACAAGGTGTGTCCTGATGTCAATTTCTATCTTGCACGTCGGCAACAGACTATTATCACGCCTTGCCCCggtgtcgtttaaatagcaaagacacttgtgaatatatctttgctgatgggcgtggtggagTATTGCAATCTTGACAACTGAAAagacaggtgcgccactgacttatttgaacagtcaactgtcagtacTGCTCAGTGCTCATAGACCCCCGCTCCTTActctcacacccacacacatggACGCTCAGCTGTgctcaaacccaacttttacatcaacaataaacagaatacataataaaataccATTGCTGTTCTTCCAAATGAACCTGCTCGCATACCTACACAGGTCCGTTTCCTTTGCTGAGTCGGGCAGATGTCCTGCGTCTTTTAAAATACCCATCCACCAAAGTTAGAGCGCACCTAGTTCTTAAAAGAAATGGCAATTGACAAGTTGATTGTTTAATTTCACGTTACATCCAAAACACATCcacgattaattaagagaattagtatacGCCTTTTGTGCGCTTTGAGACGTGCAATGcgttttttgcatgtttttaagaTACCAAAGACAATAAATCCAGCTGCAGAGTTGAAGGTTGAAAGCTCGCctataaatcactaaaacagggcccTATGACTTATTTACGTACTTTATCGGCAAAGAACATGTGTTCCAAActccaaaactttaaaatagGATGGCTAAACAATAGGCCTTTCACAATAATTATTCCATCAACccataatacaataaatggacatgactgCAGTGATTTTTGCTGATATCAGTATTGTCCCTTATTTTTTAGGAAGGCGATGCAATTAACAGGAATAAGTCAATATGTTGACTTAAATAGCCttttttttttgttttgttttgttgttttttttttttcaattgcggtccagatgcaagagttttatcagtgtgaaatatttttttttaaataataattcagtttaattttagaagttttaaaatattctcTTAGCAAAGCTTTTGTGATGCCAGATCCAGTTTCGCATATTATAAGTTGTTTGAGGTTAAGGTACATCTAATGGGCTCCTTGCACTCACGGCTCTGACACATTTCCGTTTTCAAATAATGCGGCTCGGACGTTTCCGgttgtattgtttacattcgcCTGTATAGGCAAAGCGTACATTTTTTACTAGCGAGAGGTCAAAATGAGTATCCAGCGTGAAGTTTTCAAGCTGTTTTCAGCACTGTTGTGTTCCTTTTTGCACGCCGTCTGCTAAGTTTTATAGAAGCTTTAAGCTTTCATAGCTTCCCTGCACAGAGTGATCTAATAAACAGTGGCTAATGAACATTAGTAGAGACCACTTTACCATTTCGCCGTATGAAAGGTCTGTAGCAAACATTTCATACCAGACTACCTGGTTAAACCAAAAACGTCCGAAGCTTGGAGACGACTGGCAAAGCCAGACGTACTTGCCTGAATTAGCCAccagctagcatttttattattattattatagctaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23107 lncRNA downstream 18157 7186865 ~ 7187855 (-) True G17122
TU23106 lncRNA downstream 19211 7186193 ~ 7186801 (-) True G17121
TU23102 lncRNA downstream 50110 7148577 ~ 7155902 (-) True G17117
TU23073 lncRNA downstream 190168 7012003 ~ 7015844 (-) True G17093
TU23065 lncRNA downstream 204856 6996398 ~ 7001156 (-) True G17086
TU23132 lncRNA upstream 110755 7321499 ~ 7322308 (-) True G17144
TU23120 lncRNA upstream 159624 7370368 ~ 7372488 (-) True G17134
TU23173 lncRNA upstream 225632 7436376 ~ 7436620 (-) True G17181
TU23182 lncRNA upstream 299893 7510637 ~ 7511086 (-) True G17187
TU23258 lncRNA upstream 397210 7607954 ~ 7691689 (-) False G17237
XM_007236511.3 mRNA downstream 66886 7112050 ~ 7139126 (-) False virma
XM_007236510.3 mRNA downstream 66886 7112050 ~ 7139126 (-) True virma
XM_007236506.3 mRNA downstream 106651 7075803 ~ 7099361 (-) False rad54b
XM_007236514.3 mRNA upstream 28265 7239009 ~ 7285730 (-) True ptpn3
XM_022679697.1 mRNA upstream 128016 7338760 ~ 7368562 (-) False LOC103024076
XM_022679694.1 mRNA upstream 128016 7338760 ~ 7368562 (-) True LOC103024076
XM_007236524.3 mRNA upstream 163113 7373857 ~ 7379214 (-) True LOC103024588
XM_007232433.3 mRNA upstream 623501 7834245 ~ 7839474 (-) True mrpl17
trnat-ugu_80 other downstream 217201 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 217753 6988187 ~ 6988259 (-) True trnat-ugu_79
trnat-ugu_78 other downstream 218305 6987635 ~ 6987707 (-) True trnat-ugu_78
trnat-ugu_77 other downstream 218857 6987083 ~ 6987155 (-) True trnat-ugu_77
trnat-ugu_76 other downstream 219409 6986531 ~ 6986603 (-) True trnat-ugu_76
TU23350 other upstream 718545 7929289 ~ 8007239 (-) False LOC103026934
TU23805 other upstream 2351683 9562427 ~ 9562725 (-) True G17638
TU24000 other upstream 3035931 10246675 ~ 10247318 (-) True G17792
TU24180 other upstream 3805285 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 3805285 11016029 ~ 11080151 (-) False LOC103047439

Expression Profile