RNA id: TU23182


Basic Information

Item Value
RNA id TU23182
length 450
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G17187
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7510637 ~ 7511086 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtctgctccagctgttcaagcctccgtgtctgctccagctgttcaagcctccgtgtctgctccagctgttcaagcctccgtgtctgctccagctgttcaagcctccgtgtctgctccagctgttcaagcctccgtgtctgctccagctgttcaagcctccgtgtctgctccagctgttcaagcctccgtgtcagctcccgctgcccgagtcgccgcgccgccagcaccagctcccgctgcccgagtcgccgcgccgccagcaccagctcccgctgcccgagtcgccgcgccgccagcaccagctcccgctgcccgagtcgccgcgccgccagcaccagctcccgctgccagagtcgccgcgccgccagcaccagctcccgctgccagagtcgccgcgccgccagcaccagctcccgctgcccgagtcgccacCCCACCGGTTCCTGCTCC

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23173 lncRNA downstream 74017 7436376 ~ 7436620 (-) True G17181
TU23120 lncRNA downstream 138149 7370368 ~ 7372488 (-) True G17134
TU23132 lncRNA downstream 188329 7321499 ~ 7322308 (-) True G17144
TU23109 lncRNA downstream 299893 7206012 ~ 7210744 (-) True G17123
TU23107 lncRNA downstream 322782 7186865 ~ 7187855 (-) True G17122
TU23258 lncRNA upstream 96868 7607954 ~ 7691689 (-) False G17237
TU23260 lncRNA upstream 132305 7643391 ~ 7691689 (-) True G17237
TU23263 lncRNA upstream 145668 7656754 ~ 7669115 (-) True G17240
TU23259 lncRNA upstream 147266 7658352 ~ 7691689 (-) False G17237
TU23257 lncRNA upstream 175855 7686941 ~ 7747950 (-) True G17236
XM_007236524.3 mRNA downstream 131423 7373857 ~ 7379214 (-) True LOC103024588
XM_022679697.1 mRNA downstream 142075 7338760 ~ 7368562 (-) False LOC103024076
XM_022679694.1 mRNA downstream 142075 7338760 ~ 7368562 (-) True LOC103024076
XM_007236514.3 mRNA downstream 224907 7239009 ~ 7285730 (-) True ptpn3
XM_022679669.1 mRNA downstream 274236 7179416 ~ 7236401 (-) True LOC103025538
XM_007232433.3 mRNA upstream 323159 7834245 ~ 7839474 (-) True mrpl17
XM_022679800.1 mRNA upstream 348938 7860024 ~ 7872013 (-) True LOC103033961
XM_022679805.1 mRNA upstream 349223 7860309 ~ 7872012 (-) False LOC103033961
XM_022679797.1 mRNA upstream 349223 7860309 ~ 7870612 (-) False LOC103033961
XM_022679813.1 mRNA upstream 349223 7860309 ~ 7870609 (-) False LOC103033961
trnat-ugu_80 other downstream 521826 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 522378 6988187 ~ 6988259 (-) True trnat-ugu_79
trnat-ugu_78 other downstream 522930 6987635 ~ 6987707 (-) True trnat-ugu_78
trnat-ugu_77 other downstream 523482 6987083 ~ 6987155 (-) True trnat-ugu_77
trnat-ugu_76 other downstream 524034 6986531 ~ 6986603 (-) True trnat-ugu_76
TU23350 other upstream 418203 7929289 ~ 8007239 (-) False LOC103026934
TU23805 other upstream 2051341 9562427 ~ 9562725 (-) True G17638
TU24000 other upstream 2735589 10246675 ~ 10247318 (-) True G17792
TU24180 other upstream 3504943 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 3504943 11016029 ~ 11080151 (-) False LOC103047439

Expression Profile