RNA id: TU23470


Basic Information

Item Value
RNA id TU23470
length 486
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G17402
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8633079 ~ 8633564 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTGATCACAATagtaacacattttaattaaaattacgtTCCTAGCAACTTGTTTAAACACTGAACCACTGGATATAAGCATGTATACCGTTTGATTTGGCCATAGAGGCCCATTTGGACACGTTATCCTGTGAGCGTCCATCAGTGAGGATGACAGCGATGCGGGAGACGCCAGCTCGGCTCTTGCTGAAACTGTGTTCTACCATGTGCTGGAGGGCAGTGCCAGTCCTGGATCCCCGGCCCATGTATCGAACGGCTGCTATTGCTCTCTGCACATCCCACACACTGCGGTACTGACCCAGACTGAACTCAGTTTGTACAGATGTAGAGAACTGCATGAGCCCCACCCGGGTACTGCCCGGCAATGCCCCCACCAGGCCGCTCACAAACTTCTTCATCAGCTCAAAGTTCTCCATGCCCAGGCTTTTGGACCCATCAACCACGAACATCAGATCTGTAGCCTGTTCTCTGCATTCAGACTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651299.1 lncRNA upstream 2996 8627378 ~ 8630083 (+) True LOC111194819
TU23468 lncRNA upstream 3009 8627403 ~ 8630070 (+) False LOC111194819
TU23386 lncRNA upstream 447070 8185395 ~ 8186009 (+) True G17329
TU23385 lncRNA upstream 449380 8183247 ~ 8183699 (+) False LOC103041197
TU23346 lncRNA upstream 596605 8035772 ~ 8036474 (+) True G17300
TU23471 lncRNA downstream 3058 8636622 ~ 8636853 (+) True G17403
TU23486 lncRNA downstream 35426 8668990 ~ 8690034 (+) True G17417
XR_002651305.1 lncRNA downstream 82164 8715728 ~ 8716797 (+) True LOC111194833
TU23490 lncRNA downstream 113305 8746869 ~ 8749634 (+) True G17421
TU23493 lncRNA downstream 113305 8746869 ~ 8749634 (+) False G17421
XM_022679890.1 mRNA upstream 46656 8576987 ~ 8586423 (+) True nipal2
XM_022679854.1 mRNA upstream 448242 8168839 ~ 8184837 (+) True LOC103041197
XM_022668229.1 mRNA upstream 464270 8164745 ~ 8168809 (+) True LOC111191961
XM_022679842.1 mRNA upstream 473604 8149000 ~ 8159475 (+) True hus1
XM_022679935.1 mRNA downstream 24855 8658419 ~ 8673576 (+) True fzd6
XM_015601686.2 mRNA downstream 24858 8658422 ~ 8673576 (+) False fzd6
XM_022679972.1 mRNA downstream 42064 8675628 ~ 8720475 (+) False LOC103037430
XM_022679959.1 mRNA downstream 42064 8675628 ~ 8689845 (+) True LOC103037430
XM_022679966.1 mRNA downstream 42064 8675628 ~ 8689845 (+) False LOC103037430
trnat-ugu_6 other upstream 1965186 6667821 ~ 6667893 (+) True trnat-ugu_6
trnat-ugu_5 other upstream 1973606 6659401 ~ 6659473 (+) True trnat-ugu_5
trnat-ugu_4 other upstream 1976451 6656556 ~ 6656628 (+) True trnat-ugu_4
trnat-ugu_3 other upstream 1978134 6654873 ~ 6654945 (+) True trnat-ugu_3
trnat-ugu_2 other upstream 1979423 6653584 ~ 6653656 (+) True trnat-ugu_2
TU23483 other downstream 42055 8675619 ~ 8716787 (+) True G17414
TU23546 other downstream 283022 8916586 ~ 8921656 (+) True G17443
TU23528 other downstream 284411 8917975 ~ 8921656 (+) False G17443
TU23538 other downstream 299143 8932707 ~ 8950159 (+) False G17443
TU23933 other downstream 1647660 10281224 ~ 10281976 (+) True G17745

Expression Profile