RNA id: TU23486


Basic Information

Item Value
RNA id TU23486
length 1542
lncRNA type read_through
GC content 0.32
exon number 3
gene id G17417
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8668990 ~ 8690034 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttttttttttttttttttttatttgagaTGTCAGTTTGCATTTTTTGCATGATGAAGACCGAATGCTAGTTTTGTTCTTATAATGTGATGAGCAATATGAATAAGactaatttgggagaaaattggGAACAAGAAATGAATATatatcctataaatatatatcactgTTATAACAAGGGTCTTGGCCTCTCTCCCCAGATCCTCTGCCAGACCAAACAATAGACACTGTATGAACCAGTATGAATTTGTCAATTAGTGGAGGAAACATGACTTTAGTGGTGAGCATTTGCCACATCATACCACAGTAAACACAACCAAGTAAACttgaaacaaaacaagagaaaaaggtAACTAATAACACGCACTCCTTACTTCCTCAAAAACatgaatttaataaaatgtatcaaAGCTAGCGAGCTTATACAGAGTATAAAGTGGAAGTGCTAGATTTGTCTAAGTAGGATGTCCTGCTTTCAGACTCCTGTAGAGTTAGAGCTCCCCTGGTGGCCAATTATAGGACAACATACTCTGGCAtagacacaaaacacaacacagaagCAACATGCAGACTAAACAGATATTGCATTATGATGCAGTGTTGATACAGTCAGTAAGGTTTATCACAAAATGCGTCCAATATTAACCTCTATGATTTCATCATACCTTAAGTGCATTATAGTGGTACCAAAACATGCTTCACTTTTTTAAgtcttgtattgttttattcatgttGATATCTGTATTTGATTTTGGACCTTTATATCAGCTCCTGTCAGAAAAACCAAAACCCAGCATGCTTTCCAACCTCCACAATCTTCATGAAATCGTCTAAATAACTGAGGTGATACTCATAGTAAATATAGAATGCACCAACGTTACATGgcacatttttcttttcatatttATGATTTAAGTGAAGAATGAATCACTGGAATAGTCTTAACACTGTGGATTATTGAACCCTTACCACTACAACAAAAGCAAATTGCTTTTGTTATTCCGTTATGTTTTTCATACATCTAAATTtttttttttttggatgcatCTTACAGTGATGCACATACATACAGCCAAACAAATGATAAAACTAAAAAGCAAGTAAatcaaaaacaacattaataaaGTATAGATTAAacttaaaacagtaataaagtacggaataagaaaaaaataatattaactttcttatattttatatatataacaccCTGACGTCCCTAAAGGCTGCACCACTGACTAAGTCTATAATAAACCTTTATAAACCTTTGCTGTGGCATGtttctctaaaataaaataataaactacaaataaaataacgataacaaaaataaagattaaaacatacacatatatatatatatatatatatatcctcagAAGCACTGAATGTGAAAGTTTCATTTATAGCCTGTATTTAGCTGTTTCTTCATATACTTTTTGACACTTTCGTTGCTGTTGTTAATCAGAattaaacagcaataataaaaagGGTCAAAAACACAGCTTCCTGAgtttctttttgcttttctgtaaatgtcc

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0007600 sensory perception biological_process
GO:0007606 sensory perception of chemical stimulus biological_process
GO:0007608 sensory perception of smell biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23471 lncRNA upstream 32137 8636622 ~ 8636853 (+) True G17403
TU23470 lncRNA upstream 35426 8633079 ~ 8633564 (+) True G17402
XR_002651299.1 lncRNA upstream 38907 8627378 ~ 8630083 (+) True LOC111194819
TU23468 lncRNA upstream 38920 8627403 ~ 8630070 (+) False LOC111194819
TU23386 lncRNA upstream 482981 8185395 ~ 8186009 (+) True G17329
XR_002651305.1 lncRNA downstream 25694 8715728 ~ 8716797 (+) True LOC111194833
TU23490 lncRNA downstream 56835 8746869 ~ 8749634 (+) True G17421
TU23493 lncRNA downstream 56835 8746869 ~ 8749634 (+) False G17421
TU23495 lncRNA downstream 56835 8746869 ~ 8749634 (+) False G17421
TU23508 lncRNA downstream 81813 8771847 ~ 8773763 (+) True G17433
XM_022679890.1 mRNA upstream 82567 8576987 ~ 8586423 (+) True nipal2
XM_022679854.1 mRNA upstream 484153 8168839 ~ 8184837 (+) True LOC103041197
XM_022668229.1 mRNA upstream 500181 8164745 ~ 8168809 (+) True LOC111191961
XM_022679842.1 mRNA upstream 509515 8149000 ~ 8159475 (+) True hus1
XM_015601688.2 mRNA downstream 13287 8703321 ~ 8711294 (+) True LOC103039953
XM_022667585.1 mRNA downstream 43681 8733715 ~ 8738266 (+) True LOC111191756
XM_007239766.3 mRNA downstream 92397 8782431 ~ 8811493 (+) True LOC103029568
XM_022680013.1 mRNA downstream 144508 8834542 ~ 8842882 (+) False LOC103031465
XM_022680017.1 mRNA downstream 144611 8834645 ~ 8842882 (+) True LOC103031465
trnat-ugu_6 other upstream 2001097 6667821 ~ 6667893 (+) True trnat-ugu_6
trnat-ugu_5 other upstream 2009517 6659401 ~ 6659473 (+) True trnat-ugu_5
trnat-ugu_4 other upstream 2012362 6656556 ~ 6656628 (+) True trnat-ugu_4
trnat-ugu_3 other upstream 2014045 6654873 ~ 6654945 (+) True trnat-ugu_3
trnat-ugu_2 other upstream 2015334 6653584 ~ 6653656 (+) True trnat-ugu_2
TU23546 other downstream 226552 8916586 ~ 8921656 (+) True G17443
TU23528 other downstream 227941 8917975 ~ 8921656 (+) False G17443
TU23538 other downstream 242673 8932707 ~ 8950159 (+) False G17443
TU23933 other downstream 1591190 10281224 ~ 10281976 (+) True G17745
TU24160 other downstream 2487874 11177908 ~ 11190080 (+) True G17904

Expression Profile