RNA id: TU23495


Basic Information

Item Value
RNA id TU23495
length 2701
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G17421
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8746869 ~ 8749634 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagcgGTGCACTTCAGTGTTTTTCTCCCAGCAGGTTTATTTAATGGTGGATTTCTGGTAGAGATGTGCTCCACCTCATCACAAACATCAACAAACACATTTGAAGTGGTGTCTCTTATGGAACATGCATACACTCACAGACCAAAATCACGTCCACACACAGAACAACACTTCCAGCAATAACACGGAGCACAGCACCTCTTTATAGTGGTTATAGACCAGAGCCATCAATATACAGGTCATTTTATTACATCTTCTGCCACTGCAATTACAAACCACACAGTATGGATGACCTGCTACAGATATGCACCGTGGTTGAagagtttacacacacacacacacacacacacacacacacacacacacacacacattttaccaCTGAATATGTAGTATTTGTGAAATGCTTCTTCTGCTGCCTCTTAGATTAGGAATCTAAAGATATGTCACTGATGTTTATTATAGCTGCCGTAGGGCTATGACTGTAGGTGGTATAGTTAAGTAAGAGTTGTAACAGATCAGGGGTCAGATTCAAAACGTTGTAAGATCTTAAGAACGAGCttagaaaataccttttttataattttatactaAAGAACAAATGCAAGATAAAtagttatatattaataaataaatcattttcttgataaaaaaaatcttaataattggtattcataaaaatataagttcttaaatattttgtaaCCTTACACTTGGCCTTAAACTTATCACATTCTGTAAAAGATCAAATGGTGACATATAACCTGTCAAATTTCTAAAattaatatctatttttacagtattataagTGGTGATTGTTCTTAAATTACTGTTAGTTTCTACTTAAGAAAAACAATAGCTTTCTGATGTCACACTAttgttattctattttttaaagatagatTTGTGTCCTGTTGATTATTTCCTCTACCACTCAATACAGTTccttgtttacttaatttttaaCAATTTGTGCACAAATTTAACTATATTATGGAAAATTATAAATGTGTCTCATTCATAATAAGCATAAACAGCTACATTACAAGCAATCTGCATATGAACTCAAAACTcacttttgactttttttttttcaaacaccttgttttttttaacaccacCAGTttttactgactgactgacattcacttttcattgattttctttttttagggcTTACTAAAAGTAAAGGTTCCACAAGCGTAGTAGGATcattaaaactttaataaagtTTGCAGTTACTTTTCTAAAGAACGAATGTAAGATTTGTTAGGATCATCTTGGTAAAGGACATCCCTTTTTATAAATATCTTAAGATCTTTATGAGTACAGTCCCCATGGGAAATATAGTTTGGGAAATCTGAAGTCAGATTTAAAGAATCTTCGGCTTGATCAGGAAACATCTGCTCCTGCTTCCTTTCCTCAAATGGTTGCATTCCAGTAACAAAATAAGTGCAGATGAGAGATGGGGTGATCAGAGGGAATCAGTAAAAGATGTGATGAGTATTTTCCACAGGAGGATGGGTATCCCCCGTGCTTTGTTATTGTTGGAATTCCTTTAGAAGGGCTGCTCAGGATAATAAAGTTTAACCTTTAGTTTGTCATATTTGTCATGCTGACATTTCACAGATTGTGCGTTATCGGCATTACACCACAGCATTGTTCAGAAATACTGTTCCTGATACTGTACTGCACTACTATGGTAATTTACACTAATCAACAAAacaatagttgcacccagataGAATTAACTGAGTCTTGGTAACAATAACCAACAATTACTTGTATGGAGGCACTGTGAATTGTTGTCTTGTGTTACACCTCCAAAAGGGTGGAGTCAATGCCagatttaaatcttttttaagCCCAAACTTACATTAATGAGATTCTGCAATCAGTGGATCTGAaaagcttgccttgaagacacagatactatgcAATGGCCAGCTACAATGTCAAACCTATCTCTTATAGAAAATGTTAGGAATTTCATATGGACGTGCCATCAATGCTCCATGGATTAATTAGCATTAATTAGCATCAATTAGCATTCGAGCGGCATTAATGCTAATCGATAATTGctggactccattaggaacctctacaactccatgctgagacatCTGATGTTCtgttacacatgtattacacactacttctgcaTGTGTTGCTCAATAAGTATGACCAAGAGTTGTCCATATCAGTccaaatatttaatcatttattgttccttcagaatagcattgcaatctgacaATTCCTTCAGGGTGCAACTATTTAGTGATGATGAGTTCTTTATTCTAAACTGTTAGCAACATCTATTTGTATTGAAGAGAAGGAAAGATAGCTTTAGGGAAAAAGAACACTGACAACAATGGTTTCCTAGTAGTCATTTAGAGGGCAAATGTAATAGCTTATGGCCATTTCATAACAGCAGCTGTATTGACACGACATGAGAGGGTACACGTGGGCTCCATGCAGAGAGCAGAATACTGGGAAATCCTTGTTTGTGCTGGGAGATAGTTAGAGCGGCTTTACTCATCGAAGCGCCCCTCCAGGATGCTGTCAAAAGAGAAGGGCACGAACTTGAAGCCCAAGCCGGTGTAGAACTTGTTCTGGAACTCCACCCTGGAATAGTCGATAAAGGAGAGACAGAGGTTAGAGCAGAGCTTCCAAAACAACTACAGTCTCAGCAGCTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651305.1 lncRNA upstream 30072 8715728 ~ 8716797 (+) True LOC111194833
TU23486 lncRNA upstream 56835 8668990 ~ 8690034 (+) True G17417
TU23471 lncRNA upstream 110016 8636622 ~ 8636853 (+) True G17403
TU23470 lncRNA upstream 113305 8633079 ~ 8633564 (+) True G17402
TU23468 lncRNA upstream 116799 8627403 ~ 8630070 (+) False LOC111194819
TU23508 lncRNA downstream 22213 8771847 ~ 8773763 (+) True G17433
TU23519 lncRNA downstream 123298 8872932 ~ 8877126 (+) False G17442
TU23524 lncRNA downstream 123298 8872932 ~ 8877126 (+) False G17442
TU23525 lncRNA downstream 123298 8872932 ~ 8874443 (+) True G17442
TU23526 lncRNA downstream 124362 8873996 ~ 8877126 (+) False G17442
XM_022667585.1 mRNA upstream 8603 8733715 ~ 8738266 (+) True LOC111191756
XM_022679972.1 mRNA upstream 26394 8675628 ~ 8720475 (+) False LOC103037430
XM_007239766.3 mRNA downstream 32797 8782431 ~ 8811493 (+) True LOC103029568
XM_022680013.1 mRNA downstream 84908 8834542 ~ 8842882 (+) False LOC103031465
XM_022680017.1 mRNA downstream 85011 8834645 ~ 8842882 (+) True LOC103031465
XM_022680024.1 mRNA downstream 85749 8835383 ~ 8842882 (+) False LOC103031465
XM_007239768.3 mRNA downstream 94864 8844498 ~ 8868718 (+) True LOC103030220
TU23483 other upstream 30082 8675619 ~ 8716787 (+) True G17414
trnat-ugu_6 other upstream 2078976 6667821 ~ 6667893 (+) True trnat-ugu_6
trnat-ugu_5 other upstream 2087396 6659401 ~ 6659473 (+) True trnat-ugu_5
trnat-ugu_4 other upstream 2090241 6656556 ~ 6656628 (+) True trnat-ugu_4
trnat-ugu_3 other upstream 2091924 6654873 ~ 6654945 (+) True trnat-ugu_3
TU23546 other downstream 166952 8916586 ~ 8921656 (+) True G17443
TU23528 other downstream 168341 8917975 ~ 8921656 (+) False G17443
TU23538 other downstream 183073 8932707 ~ 8950159 (+) False G17443
TU23933 other downstream 1531590 10281224 ~ 10281976 (+) True G17745
TU24160 other downstream 2428274 11177908 ~ 11190080 (+) True G17904

Expression Profile