RNA id: TU23508


Basic Information

Item Value
RNA id TU23508
length 383
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id G17433
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8771847 ~ 8773763 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTCAGTCAGTTCCAGAAAGTTCTTCTTCAGAGCTTCTTGATTGGTATTGATCTCCTTCAGCTCATTCTCCAACTTCTCAAAAGTTGCCTCAAGGTCAATCATGTCTCGTGGGAAGGGGACTTCTGGATTCTCTCCAGTGTCCACTGTGGGGATGTTGGCTTTCTTAATCTCCTTCTCCACAAACCGCAGCTTTCTGTCCATTTCCTCACAGCGCCTCACTTCATTGACAAACTTCCTCTGGAACACGTTCACATCAGGGTTCAGATCTCTGAACTGCACCATTCCCAGTTCCCCCAGTTCACTGACACAGCAGTATGCAGCTTCTGACTGCAGGAAAAGCTGCGCTAGGGTCATCTCCTCACTCCGGAATAGTTCTCCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23490 lncRNA upstream 22213 8746869 ~ 8749634 (+) True G17421
TU23493 lncRNA upstream 22213 8746869 ~ 8749634 (+) False G17421
TU23495 lncRNA upstream 22213 8746869 ~ 8749634 (+) False G17421
XR_002651305.1 lncRNA upstream 55050 8715728 ~ 8716797 (+) True LOC111194833
TU23486 lncRNA upstream 81813 8668990 ~ 8690034 (+) True G17417
TU23519 lncRNA downstream 99169 8872932 ~ 8877126 (+) False G17442
TU23524 lncRNA downstream 99169 8872932 ~ 8877126 (+) False G17442
TU23525 lncRNA downstream 99169 8872932 ~ 8874443 (+) True G17442
TU23526 lncRNA downstream 100233 8873996 ~ 8877126 (+) False G17442
TU23552 lncRNA downstream 122202 8895965 ~ 8898289 (+) False LOC111191971
XM_022667585.1 mRNA upstream 33581 8733715 ~ 8738266 (+) True LOC111191756
XM_022679972.1 mRNA upstream 51372 8675628 ~ 8720475 (+) False LOC103037430
XM_007239766.3 mRNA downstream 8668 8782431 ~ 8811493 (+) True LOC103029568
XM_022680013.1 mRNA downstream 60779 8834542 ~ 8842882 (+) False LOC103031465
XM_022680017.1 mRNA downstream 60882 8834645 ~ 8842882 (+) True LOC103031465
XM_022680024.1 mRNA downstream 61620 8835383 ~ 8842882 (+) False LOC103031465
XM_007239768.3 mRNA downstream 70735 8844498 ~ 8868718 (+) True LOC103030220
TU23483 other upstream 55060 8675619 ~ 8716787 (+) True G17414
trnat-ugu_6 other upstream 2103954 6667821 ~ 6667893 (+) True trnat-ugu_6
trnat-ugu_5 other upstream 2112374 6659401 ~ 6659473 (+) True trnat-ugu_5
trnat-ugu_4 other upstream 2115219 6656556 ~ 6656628 (+) True trnat-ugu_4
trnat-ugu_3 other upstream 2116902 6654873 ~ 6654945 (+) True trnat-ugu_3
TU23546 other downstream 142823 8916586 ~ 8921656 (+) True G17443
TU23528 other downstream 144212 8917975 ~ 8921656 (+) False G17443
TU23538 other downstream 158944 8932707 ~ 8950159 (+) False G17443
TU23933 other downstream 1507461 10281224 ~ 10281976 (+) True G17745
TU24160 other downstream 2404145 11177908 ~ 11190080 (+) True G17904

Expression Profile