RNA id: TU23747


Basic Information

Item Value
RNA id TU23747
length 1268
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G17585
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8984361 ~ 8985654 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTGTCCATCTGGCACAACTCTGTTTGCCAGTCCAAATGCCAGGGCCTCCTGAGCTCCTACAGGTCTTCCAGTGAGAATAAGATCCAGAGCACGGGAAAGACCGATCAGCGCCGGTAGACGCACTGTACCTCCATCAATTAGTGGCACACCTAGTAGGGCGAAGCAGACAACAAGAGAGCTGTGTGCCAAAATGTACCATAGTAAGTATGGTGAACCATTCACGAAAAAAcatcactgtaaaaaacacacattcacaaaatTACAGTACTAAGCAGAAATACAGCCCTCTTTGCTACttgcttaaaaatattttcttttctttaaaaataaattctcTTTTCCCAAAATTCAGCCTTCATTTGTTCCTTTTAAGGGTAATATGATATGGTTTTAATTAAACAGATCAAGAAGAGGAAATAGAACAAATTAGTGGAAGGCATTACCTTTTTCAGGACCAACACAATATGTCAGCATAAGTGATGCAATTCTGCATTACTGGAGCACAGAAAAATAATCAAGAAACAGAATGGATGGCCACCTGATCACTGGCAGTTCTGGTGGATGAGGTACATGAAAGCAGCACTGAATTAAATGCTCTCTATTTAGTGCAAACAGGAATGGACTTAGCCGTATGTTTCTCATGCTTTAAATAATATGCATTTGAAAGATTTATTAGAAATTCAGACCATCACATTGGGTGGGGGCTCCTATTCTCAGACTACTGACCATGTGGTGCTGATGGGATTTGAACTTGCTCTCAACATCTTGCTCTCAAAGAACAGGCAGTTAGACACTTGCAGCATTCTAGTACTGTGAAGCCATGTACATATCTGCTGCCAAGAAAGGTCAGAAAAGTAAATTCCCTTTGaaattgttctgtttttgtgtAGTGTAATAACACACCTCTAGGTGCAACAAATAGGTGGCTGCTGATGCTCATCAAGTGGAGATTTTAAGAACATCATAAGTTTAAATCCTAGCAAGGGCtcaacactttttgtttagttattGTTAGAAAGTCACACttgtgtgtaagttgtgaggtattaaaacaaaaattctaCTGACAAGTTCCATAATGTAGAGATCAAAAAGAGTATAAGGAAAGTATGACCATTTTACCAAATCTGCGGCAGAAAATTCCAAAAATGGCGCTTTCTTCCACCACTCTGATATCTGCCAAAAGGGCCAGCTCCAAACCACCGGCCACTGCATAACCGCTCACTGCTGCAATCAGTGGCTTGGAGAGAGTCATACGAGAGGGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23708 lncRNA downstream 23521 8947833 ~ 8960840 (-) False G17558
TU23712 lncRNA downstream 23521 8957043 ~ 8960840 (-) False G17558
TU23705 lncRNA downstream 23521 8958680 ~ 8960840 (-) True G17558
TU23709 lncRNA downstream 70158 8911970 ~ 8914203 (-) False G17558
TU23679 lncRNA downstream 98044 8871219 ~ 8886317 (-) False LOC111188216
TU23752 lncRNA upstream 12446 8998100 ~ 9442767 (-) True G17589
TU23767 lncRNA upstream 82381 9068035 ~ 9157978 (-) True G17600
TU23766 lncRNA upstream 118910 9104564 ~ 9108428 (-) True G17599
TU23807 lncRNA upstream 577397 9563051 ~ 9563268 (-) True G17640
TU23813 lncRNA upstream 617133 9602787 ~ 9603419 (-) True G17646
XM_022680081.1 mRNA downstream 4743 8975458 ~ 8979618 (-) False LOC103047134
XM_022680076.1 mRNA downstream 4743 8975458 ~ 8979618 (-) False LOC103047134
XM_022680071.1 mRNA downstream 4744 8975458 ~ 8979617 (-) False LOC103047134
XM_007260049.3 mRNA downstream 5284 8975458 ~ 8979077 (-) True LOC103047134
XM_022680048.1 mRNA downstream 107236 8873882 ~ 8877125 (-) True LOC103030846
XM_022680116.1 mRNA upstream 85728 9071382 ~ 9084286 (-) True txndc5
XM_022680125.1 mRNA upstream 123360 9109014 ~ 9113905 (-) True bloc1s5
XM_022680199.1 mRNA upstream 1009491 9995145 ~ 10009151 (-) True mak
XM_022680201.1 mRNA upstream 1009491 9995145 ~ 10009151 (-) False mak
XM_022680205.1 mRNA upstream 1009491 9995145 ~ 10009148 (-) False mak
TU23350 other downstream 977122 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 1995550 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 1996102 6988187 ~ 6988259 (-) True trnat-ugu_79
trnat-ugu_78 other downstream 1996654 6987635 ~ 6987707 (-) True trnat-ugu_78
trnat-ugu_77 other downstream 1997206 6987083 ~ 6987155 (-) True trnat-ugu_77
TU23805 other upstream 576773 9562427 ~ 9562725 (-) True G17638
TU24000 other upstream 1261021 10246675 ~ 10247318 (-) True G17792
TU24180 other upstream 2030375 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 2030375 11016029 ~ 11080151 (-) False LOC103047439
TU24200 other upstream 2090584 11076238 ~ 11083799 (-) True LOC107197924

Expression Profile