RNA id: TU23766


Basic Information

Item Value
RNA id TU23766
length 3560
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G17599
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9104564 ~ 9108428 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaagaatttcatgattgcactatttcaaattattctaattcgttgaccagcacctgtatatatattagggtATAAAAACATTCTAGCAGTGCAGTAGATtttgctaatggtcattaaataattaacagcaaATTGCAAGGTGACTGATGtgccatataaatataaaaaaatgacagtagGGTGTGGAGAATGTGGACTTGTCACACCACAAGTATGTGAAATGGTGTCAGGATATATATTATTAGCAGCGTAACACAGACTAAAAAACATCAGCAATATGTTTAGCCCTGTTGGAGTTTAACATATTGGAACTGGAATTAATTGCTGATTTTCAAACCAGTTTACAATAATTGCTGTTACCAAATTCACAATCCACAACTAGGTTACCCTGTATTCTGCATATGCATTTACCTCCTAAAACAGGGACTTTTAATATGTTGCCTTAAGGCAGCATTATGCAGTTAGATCACAAGGCAATCATGCTAAAGCAGTGGTTCTTGATGTTTTTCAGGGATATGAAAACAGGAACCCACAAGATCCTAAAAAGTGGGCGTTTGTGGTTTATGCTTTGAGACTATGGAACAGTCTGCCACCCAATTTTCACCAAGCCACTTCAATCTtggtttttaaatcaggtctaaAAACGGACTTTTACAAACTGGCATTTAAATAGAAAGAGACTGTGGTAATAGTagatgttttattcagtttattgtgtttatttgttttattattcatgaatagttttatttgattttccaTGTTTAGCACATTGGTCAGTGCAAGTTGTTAAAAAGAGTGCTTCATCAACACATCTTGCTTACGTGTAAAGTTGGTTGTGTGAAATTTGGTGTGAAATAACAACCTTTACCAGTCATAATATAAAACCCAAGTCCAAAGCCAATGGCGAAATGATTATTTCTTCATCCTTCAGAGGGAGGCTCTAATTATATGGTGCAATGCCTTTTCTGTCTGGTATGAAAACTATCGTAAAACCATCAGCTTAAGACTTACCGGCTTTAACATTCCACATCAGACAAGTAAACTCTGAGAAACTGCACCTGTAGTGAAGCCTTTtgcttaatattaaaatgttttagaacCAACAAGGAGGCTTTCATCTTCTACCGTTTACTCTCAAAGCGTGCTAGGCTGCACATCGTCCATGGAAAGGTCAAAAATGAAGTCACTGGATGAACTAATCCTGAGTGCGTGATTACCACCCTTTCACCTATATTTCAGACCGTCCAATGTTAACTCCAAGTCAGGAAATTTTCTAAGCAAACGTGGCGGGAAGTTTGCTTTTACTCACCATGGTCTTGAATGTCATGATAAAATAAGGCTTTTGTGGTTTatttgaacagttttttttttctgtgtcagGATGAGTGTACAACCTATAAAAAAGTTGCACCCATAAGGAATTAACTGACAGGAATGGAACTGGGTGGGTGGGTTTGACATCATGAGACATGCTTCTCATTGCACATGATTTCCATTCTTACTCTTGCTGTTGTGTTGGTAGCATCCTTTGCCAGTGAAGTATCAGTCATGACTACAGACATTTAGAGAGCCGCCATGCTCTCCATGAGTCATCCTGTTTCATCCttccagcaccattggcagacggctgcatGACACGGGACTAAATGCATGCAAATCATTACAACTTCCTTAACACCATGTGAGCATCGCCAAAGACTGCAGTGATTTCGGAGTGACTCAGAATGACAGCAAGTAATCCTCAGTAAAAAGTGTTGCTTTTGTCTTGCTCAAGAAACCATAAGATCTGTTTTCCCTCCACAGGTTGTGCAAGACTTCCTGCAACCATTCATCAGAGGTCAATTACCAACCTCAGGCTGTTGGCTGATTATATTTGATTGGTGGACTATGTTTAATTTAGCAGTGACCTTCTGCCAGGTTTCAAAAGATACAGAACACCTGCCAGGCATGCTGAGAGATACAGTACCTCTCTTGGAAGGACTTTCCTGGGATCAAGTTGTAATGAAGCAAACCCAACAGAGGGGTCAGCCTGCGTGCAGCAGTGACTGGGTTTCTGAAGTGGTTCCCAACAGAGGCTGCATCACTTCTGCTCGCTGACCCTGGAGGGAGGCTCCTTCGGATGTAGTGTTTGGTTCAGGAAACGGTGCTTTGCGCCACTATTTCCTGTCTGTGCCTCTCAAGACTGACCGTCCAGCAAGATGGGAGCAGAGTGTGCCTGTTGCCGGGGAATTTTATCAGACCAGGGCCTGCCTCGCCAGCGCTCCAGGAACCCAAGCTTGtctgagtttttttcttttctggccTCCTCTCTATCAGTGTTGCAGAGGTCTTCCTGTTTTGGAGGGAGTGCAGTGATCCAGGTCAGAAGCCGGACTAGCCTGCCAACATAAATCGTGAAGGAGAAATGCAGTAAGAGCTGATCTGACAGAGGAATGCACGGAGATCAGACGTCCAATCTACATCCCTGCTTGCTCCACCTTCCTCCGAACAAAGGAACATCCATCCACAGCACTCCAAAGGAGAACAGCATGTCACAGCATTTTTAAGCACACTGTATCCATGTACAGACCACAAATTGTCTTAAATGAAAGATTTAATGAGGAATGTCCAATCTAGGTATGATAGATATCAGGTTGACTGGCAGGCAATGTTCCCCTAATGAGTTCAGAATTAAACGTTATTGGCCAAGTATTCTTGTACATTTATACTGTACAAGGTATTTGTCTGTTGCACACCTACAATTACATGCCCACTTAAAGCTCTTGGGATTGCACTATTCAAATAAATCACCATCTAGACAACTTTGACACCCAGACCTGcataagttgtaaggtgttatcttgtgagtgactGTTTGGACAGTTTGCAGGAGGCTTGCTAGCAGGTGCCAGACTGATGAGacattcatttttgtttgtgcatTTAATATTCCTCTATCCTTAatgtcacatgtgtaccaagaatacgtcatagaaggcattaccacccacagtggacagtgcagtgtgtggtaatgattgtgaccagtgaCATCTAGGTAGAACTGTCCgtgtaaaaagaaaattggCTGGCAAAAATCACACATACATATCCCGCAGGTCATTGCAGTATTCTTTAATCTCTGTGGGACATGGCAAGCATTATGAGATATGGTACATCTCATGCCCCCGTTAGCCTCTCTGTGCCAGCACTTGGATTGTATTGGAATGTCCAAGACATAGTACAATGGGAAAGtcctagagtttagattctttGCCCAAGCCCGACCCAATGCCTGAACCGAACTTGGGCTGGGTTGAGCTGAGATCTTCCTTCACTTTTCTCCGGCcaggttgggtcgggctcaagaaaatggtctgtgatgtaggcatctgttttttaatgatatttttattttatataaagctgtggcatgattatcacaatatagcaaagtaataaAGTTAGAATGTTAAAATTACGCAGCTCTGGGCGCACATATTAGCTCCTCCACTAGTCCGCATTACACATCTGACTTTAAGCACTGTGAGTagatgttcttaataaacatttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23747 lncRNA downstream 118910 8984361 ~ 8985654 (-) True G17585
TU23708 lncRNA downstream 143724 8947833 ~ 8960840 (-) False G17558
TU23712 lncRNA downstream 143724 8957043 ~ 8960840 (-) False G17558
TU23705 lncRNA downstream 143724 8958680 ~ 8960840 (-) True G17558
TU23709 lncRNA downstream 190361 8911970 ~ 8914203 (-) False G17558
TU23807 lncRNA upstream 454623 9563051 ~ 9563268 (-) True G17640
TU23813 lncRNA upstream 494359 9602787 ~ 9603419 (-) True G17646
TU23815 lncRNA upstream 496488 9604916 ~ 9605232 (-) True G17648
TU23829 lncRNA upstream 705283 9813711 ~ 9814683 (-) True G17661
TU23831 lncRNA upstream 706501 9814929 ~ 9818329 (-) True G17663
XM_022680116.1 mRNA downstream 20278 9071382 ~ 9084286 (-) True txndc5
XM_022680081.1 mRNA downstream 124946 8975458 ~ 8979618 (-) False LOC103047134
XM_022680076.1 mRNA downstream 124946 8975458 ~ 8979618 (-) False LOC103047134
XM_022680071.1 mRNA downstream 124947 8975458 ~ 8979617 (-) False LOC103047134
XM_007260049.3 mRNA downstream 125487 8975458 ~ 8979077 (-) True LOC103047134
XM_022680125.1 mRNA upstream 586 9109014 ~ 9113905 (-) True bloc1s5
XM_022680199.1 mRNA upstream 886717 9995145 ~ 10009151 (-) True mak
XM_022680201.1 mRNA upstream 886717 9995145 ~ 10009151 (-) False mak
XM_022680205.1 mRNA upstream 886717 9995145 ~ 10009148 (-) False mak
XM_022680213.1 mRNA upstream 886717 9995145 ~ 10009144 (-) False mak
TU23350 other downstream 1097325 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 2115753 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 2116305 6988187 ~ 6988259 (-) True trnat-ugu_79
trnat-ugu_78 other downstream 2116857 6987635 ~ 6987707 (-) True trnat-ugu_78
trnat-ugu_77 other downstream 2117409 6987083 ~ 6987155 (-) True trnat-ugu_77
TU23805 other upstream 453999 9562427 ~ 9562725 (-) True G17638
TU24000 other upstream 1138247 10246675 ~ 10247318 (-) True G17792
TU24180 other upstream 1907601 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 1907601 11016029 ~ 11080151 (-) False LOC103047439
TU24200 other upstream 1967810 11076238 ~ 11083799 (-) True LOC107197924

Expression Profile