RNA id: TU23767


Basic Information

Item Value
RNA id TU23767
length 1684
lncRNA type read_through
GC content 0.48
exon number 3
gene id G17600
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9068035 ~ 9157978 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gattttgctatttataggtttatttttgagtaaaatgaacattgatgttttattttataaactacaaacaacatttctcccaaattccaaataaaaatattgtcatttagagcatttacttgcagaaaatgagaaatggctgaaataacaaaaaagatgcagaactttcagacctcaaatactgcaaagaaaacaagttcatattcataaagttttaagagttcagaaatcaatatttggtggaataatcctgatttttaatcacagttttcatgcatcttggcatgttctcctccaccagttttacacactgcttttggataagtttatgccactcctggtgtaaaaattcaagcagttcagcttggtttgatggtttatgCTTCAagatggtaaaatcaaagaagtgctctcttatttttttccagatctgaatacttaaaatgtttcagtgccagtatttttgcaatataatCAAATTGTGTCAAAACGTGAAATACTGCAAAAATGAAGGTACAAAGCCTTTGCCTGCCATTTgtgatgtatatttaaaaaggacaaatggCAATTGGTAAAATGACAAGGTTGGAAAACCAGAACCTGGTTTGGGGTAAAATGAGCTGTAAATTTGtacaaaaaactgtttaatctgTAGAAGTTGGCCAGACACAGGTGTTGTATGAAAAATGATAGATTTGTGGTATCGTGAATGAGGCTTGCAAAGAATAGAAGGGTTGTGTCCTCGGATCTTAAGAACAATACCTCTGTTGTTTTGGTTGCTTTGATGCCTGTGACCACGTTCTCTGGCGTGCGACGGCAAACCACGCGTAGTGTAGAGCAAATATtgagagaataaaaataagCTGTTTTATTAAGACCCCTAAAAGAGTTCAACCAGGTTCAGCTGTTGTATTTTTGGACGGCAGTACAGCATACAGCAACTGTATAAAAActgggaaaataaaaatagatctCCATTTCTGTGCTATGATGTGGCTGTATCAGGGCATGATTAGGTTTCGACAGTCTgagatgttaaaataaaaaaatcaagcttTGGTTAGtcaaatacagaataaataccTTTATAAAATATAGAATGGATCTTGGATAATAGGTTTTCAGTGACAGTTCACTGGTTAAGGCACTGGCTCTGTGTTCAGATGTGGCTGTACATACTTTCCGGACTTAGCAGGATTAGGAACCGGTACACGAGAACTGACTGTGTGTGAACAGGAAAGAGGGGGGGAAAGCAGCACATTCCTCACACAGTCCTTAATAATCCCACATCCAGTACAGCCAGGTCGAAGAGAGGGATAATgcatacgcacacacataccTACACAAACACCCATCCACTCAATATATCTATACTAGAATTTGAACTTTCACACTACAAACCTTtctttaccacacacacacacacacacacacaccgagctgcagccgctgggcAGGGGGTAAAGAGGGGGTAAGCTAGCGTGACGTCCTGGAGGTCAGTGGCAGCCGCAGGCACGCACCACCATGTTCTTATACTTCTTCAGGATGACGTTGGAGTTGTCGTCGAAATAGAGCACAGAGATGGCGTGCAGCTTGGTGGGGGCACAGCAAGGCTTCGGGACGTTCTCAGGATTCATCAGGTGGACCTGGAGAACAAGAGGAATCAACTGGAGGTCAACTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23747 lncRNA downstream 82381 8984361 ~ 8985654 (-) True G17585
TU23708 lncRNA downstream 107195 8947833 ~ 8960840 (-) False G17558
TU23712 lncRNA downstream 107195 8957043 ~ 8960840 (-) False G17558
TU23705 lncRNA downstream 107195 8958680 ~ 8960840 (-) True G17558
TU23709 lncRNA downstream 153832 8911970 ~ 8914203 (-) False G17558
TU23807 lncRNA upstream 405073 9563051 ~ 9563268 (-) True G17640
TU23813 lncRNA upstream 444809 9602787 ~ 9603419 (-) True G17646
TU23815 lncRNA upstream 446938 9604916 ~ 9605232 (-) True G17648
TU23829 lncRNA upstream 655733 9813711 ~ 9814683 (-) True G17661
TU23831 lncRNA upstream 656951 9814929 ~ 9818329 (-) True G17663
XM_022680081.1 mRNA downstream 88417 8975458 ~ 8979618 (-) False LOC103047134
XM_022680076.1 mRNA downstream 88417 8975458 ~ 8979618 (-) False LOC103047134
XM_022680071.1 mRNA downstream 88418 8975458 ~ 8979617 (-) False LOC103047134
XM_007260049.3 mRNA downstream 88958 8975458 ~ 8979077 (-) True LOC103047134
XM_022680048.1 mRNA downstream 190910 8873882 ~ 8877125 (-) True LOC103030846
XM_022680199.1 mRNA upstream 837167 9995145 ~ 10009151 (-) True mak
XM_022680201.1 mRNA upstream 837167 9995145 ~ 10009151 (-) False mak
XM_022680205.1 mRNA upstream 837167 9995145 ~ 10009148 (-) False mak
XM_022680213.1 mRNA upstream 837167 9995145 ~ 10009144 (-) False mak
XM_022680217.1 mRNA upstream 837167 9995145 ~ 10009004 (-) False mak
TU23350 other downstream 1060796 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 2079224 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 2079776 6988187 ~ 6988259 (-) True trnat-ugu_79
trnat-ugu_78 other downstream 2080328 6987635 ~ 6987707 (-) True trnat-ugu_78
trnat-ugu_77 other downstream 2080880 6987083 ~ 6987155 (-) True trnat-ugu_77
TU23805 other upstream 404449 9562427 ~ 9562725 (-) True G17638
TU24000 other upstream 1088697 10246675 ~ 10247318 (-) True G17792
TU24180 other upstream 1858051 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 1858051 11016029 ~ 11080151 (-) False LOC103047439
TU24200 other upstream 1918260 11076238 ~ 11083799 (-) True LOC107197924

Expression Profile