RNA id: TU23805



Basic Information


Item Value
RNA id TU23805
length 299
RNA type TUCP
GC content 0.46
exon number 1
gene id G17638
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9562427 ~ 9562725 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ctgtgtatacgtccgcctcctcgtctctctgcctgggtcaaccctgacaaAAAGACCGACCATCATGGACGTAGCACAGTGGCATGCAGCTCGAAAGGCGGACCTTGAATATCTCCGGCTCCTCGCCGAGCAAATCCGGGGAGATGACCCTCTTCCAGCGCCTTTCCTTGGGTTGGAGCCCGTCAGCCCAGCTTCAGAGGCGCCCACCGAGACCCACAAGGGAAAAAAGTCTCGGAGGAAACAGGCCCGAAAAGCCCGCAAGGCGCGGGAGGACTCCCTCCGGAGCGGGGAAAATTTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23752 lncRNA downstream 119660 8998100 ~ 9442767 (-) True G17589
TU23767 lncRNA downstream 404449 9068035 ~ 9157978 (-) True G17600
TU23766 lncRNA downstream 453999 9104564 ~ 9108428 (-) True G17599
TU23747 lncRNA downstream 576773 8984361 ~ 8985654 (-) True G17585
TU23708 lncRNA downstream 601587 8947833 ~ 8960840 (-) False G17558
TU23807 lncRNA upstream 326 9563051 ~ 9563268 (-) True G17640
TU23813 lncRNA upstream 40062 9602787 ~ 9603419 (-) True G17646
TU23815 lncRNA upstream 42191 9604916 ~ 9605232 (-) True G17648
TU23829 lncRNA upstream 250986 9813711 ~ 9814683 (-) True G17661
TU23831 lncRNA upstream 252204 9814929 ~ 9818329 (-) True G17663
XM_022680125.1 mRNA downstream 448522 9109014 ~ 9113905 (-) True bloc1s5
XM_022680116.1 mRNA downstream 478141 9071382 ~ 9084286 (-) True txndc5
XM_022680081.1 mRNA downstream 582809 8975458 ~ 8979618 (-) False LOC103047134
XM_022680076.1 mRNA downstream 582809 8975458 ~ 8979618 (-) False LOC103047134
XM_022680071.1 mRNA downstream 582810 8975458 ~ 8979617 (-) False LOC103047134
XM_022680199.1 mRNA upstream 432420 9995145 ~ 10009151 (-) True mak
XM_022680201.1 mRNA upstream 432420 9995145 ~ 10009151 (-) False mak
XM_022680205.1 mRNA upstream 432420 9995145 ~ 10009148 (-) False mak
XM_022680213.1 mRNA upstream 432420 9995145 ~ 10009144 (-) False mak
XM_022680217.1 mRNA upstream 432420 9995145 ~ 10009004 (-) False mak
TU23350 other downstream 1555188 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 2573616 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 2574168 6988187 ~ 6988259 (-) True trnat-ugu_79
trnat-ugu_78 other downstream 2574720 6987635 ~ 6987707 (-) True trnat-ugu_78
trnat-ugu_77 other downstream 2575272 6987083 ~ 6987155 (-) True trnat-ugu_77
TU24000 other upstream 683950 10246675 ~ 10247318 (-) True G17792
TU24180 other upstream 1453304 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 1453304 11016029 ~ 11080151 (-) False LOC103047439
TU24200 other upstream 1513513 11076238 ~ 11083799 (-) True LOC107197924
TU24378 other upstream 2122262 11684987 ~ 11685391 (-) True G18037

Expression Profile