RNA id: TU23831


Basic Information

Item Value
RNA id TU23831
length 3401
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G17663
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9814929 ~ 9818329 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAATCTGCCCCACCTCCCCAACACCAACTCCCACAAGTATTGGATTATTAGCTGAAAgcaatcattttaaaatcattttattattttgttatattgtcGCCAGATAGCGCTGTAATCCTGTGTTTTGATATGTTGTTATttatgtcaccggggaaaggacgcacaccaaatgacaaaataactttttttccgggtattttattctgatttagttgtatttaaaacaataaaaataaaattaatacactgtaaaaccctaacttagaacacagcacagtatttggtagtggcactaattacagaaaatagataaataacattaataccaccttaataccattaacagagctctttttatatttgtttttaagctcacctcgatttactcagctttactcaacaagatttgagcatttcatcaagagaacttggacaaacagcttctgtaacccagaaaaatacaaggcttgaccacgaggagcacactaccccacagaaacaatgccatctgcccgcatctggttgtgattcattcaaaatacatgtttagaaaggcaatataggcatctactactgttataggccaactaaaccttatattgttcagtatttcctgatttttacctcttatttcattaggatggctctggatggatcctaaaatggagcaccaccattcactgcagcttgagcctccttctctaccatgctcttagctcctccctttcctctcccagggtgacaacacttctgattttgtttcttaaagttacagacacacattttaaaggtgtatactcaattcaccacctggctacattctCCCCTGCTCAGGAGTCAACGTCCTCTGTGACCTCATAAGATTTCTTTACCTCTTTCACAGCTTCTCTGAAAAATGCTGTACCCAAGCTGGATAAAATTTGTGAAACTATCACTGAATCAAGTGGGACGGACTCTAATATGGATCTGGGTTCATGATGCAGGTTAGAATGATGTCCTGCATTAGTTCTTTTGCTCCTACGAGGAGTAGGCACAGGTAATGAGTGAACCTCAAGATTGGACCCAGTATCTGACCCAGTATCTGATTCCACACGAGCATGTGCCTCTTTCAGTCGCCTTTGGTGAGCAGCTAACCAGTCAGCTTTTGCTGATACCTCTGCAGTCTGTCCTAACAAAGCATCAATTGGCAGATGCGGATCGATTCCAAAAAAGCAGTAAATAAGGGGAATACCCCGTTGTGGCATGAGGGGTCACATTGTATGCGTACACAACTTCAGATAAATGCTCAGGCCAACGACGCTTTTTGTCTGGAGGGAGACTGCGCAAAAGATCGTGTAGCGTCCTATTAAAGCGCTCACACTGGGCGTTTCCGGTAGGGTGATGAGGAGTGGTACGGCTTTTCTTTACACCATACAGTTTACAAAGTTCAGCAATCAATTCACTTTCAAAATTACGGCCTTGGTCTGAATGCAGACGCTCGGGCACACCGTACTTCATAAACCATTCCTTTAAAAGGATTTTTGCTGTTGTGTCTGCTTTTTGGTCTCGAGTCGCGAAAGCCTGTGTAAATTTCGTGAACACATCTGTGATAACCAGAACATTTTCTCTACCATCTGTAGCTGGTTCCAACAGAGTAAAATCTACAGCAATTACCTCTAATGGTCTGGTAGCCAAAAATGACTGCATAGGTGGACGTATCTTTGGCTGAGGCATTTTGGTAAGTACACAACGTTGGCATTTCTTTACCCACTGCTCAACATCCTCATACATCCCAACCCAAAAACATCTTGGCTTTAACAGTTGCATTGTCCTCTCTATGCCCTGGTGACCCATAGAGTTATGTACACTCTCAAGAACTTGTACTTTTAAACAAGCTGGCAACAGTAACTGATTGCATTCACCTTGTCTCAGATCTTCCACCACTCGGTACAGTAGACCATCCTGCTCTCTAATTCTACCCCAGTGCTTCAGAAGTGACAGTACAGATTTAGACAAGTCTCTCCTCTCCTTATTGTTTGGCTTTTTCCCTCTGACCCAAAAGGACCTAAAGATGCTGAGGACAGGATCTTGCTCCTGAAAAGAACGCAACTCATCTTTAGAATAGCCTGGTAAAGTAGGTGTATTTTCCTGATCTAACCCAGCCAAAGGGTGACCTGCCTCACTTGCTCGAATTTGTCGAACCTCGCACCTCTCCAGCCCAACATCTACTAGTTCCTGCCCTAGTGTGGTTCCTTTGTTGATCAAATTACAAATAGCCACACAACCATCATACTCCAGATCTTCAGAGGCAACGTTCGGCTCCCCTGCTAAAGGGTGCCTAGAGAGGGCATCCGCAGCCTTATTACTCCGGCCGGGGCGATACTGAACGTCAAAGTCAAAGGCAGCTAACTGCGCTACCCATctctgctcaacagctcctagCTTGGCTGTGTTGAGATGGCATAATGGGTTGTTGTCGGTGATTGCGGTAAATTTTGCACCCAGCAGATATCCCCTAAACTTCTCAGTTATGGCCCATTTTAGGGCGAGAAGCTCCAACTTCATACTGCTGTAGTTCTTGTCATTTTGTTCAGCCTTTCTAAGCCTACGGCTTGCGTATGCTATCACCCGCCTTTTACCATCCTGTTGCTGACATAAGACAGCTCCTAAACCGTGGCTACTCGCATCTGTCTCTACAGTGAAAGGGCAAGTGAAGTCTGCAAACCCGAGCACCGGAGCACTAACCAGCTTCtcctttaaaacatcaaaagagGTCTGACACTCAGTACTCCATAAGCTCAACAACCGCTCATTTACTCTAGAGGGAGGTCCAACCATTAGACAGTTATTTACCAGATCATGCAGTGGACCAGCTATCTTTGAAAACCCCTGCACGAATCTTCGGTAATAGCTACAGAACCCTAAGAATGAGCGTAAAGCTTTCAGAGTGGTAGGTACTggccactgcttcacagcttctACCTTATCAGGGTCGGTCGCTATACCTTCTGCGGAGACCTGATGTCCTAGGAATTTTACCTTTTCCTGAAGGAAATGACATTTCTCTATTTTGATTTTGAGACCTGTCTCCTGGAGTCGTCTCAGTACTGTCTCTAATCTCTCAACGTGCTCTGAAAATGTCCTAGAGAAGACTAAAATGTCATCCAAGTAtactaaaattatttgaaaaattaGGTCAGTCATAGTTGCCTGCATCAACCTTTGAAATGTAGCAGGTCCATTTACAACCCCCATCGGCATATAACCCATATGGGGTTGTGAATGCAGTCTTGTGCCGGTCACGCTCATGTACTGCCACCTGGTGGTATCCACGAGCCAGGTCTATAGATGAGAAGAACTTTGCACCTCTCAGAGCATCAAAACTTTCGTCTATACGAGGTAAAGGAAATGCGTCTCGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23829 lncRNA downstream 246 9813711 ~ 9814683 (-) True G17661
TU23815 lncRNA downstream 209697 9604916 ~ 9605232 (-) True G17648
TU23813 lncRNA downstream 211510 9602787 ~ 9603419 (-) True G17646
TU23807 lncRNA downstream 251661 9563051 ~ 9563268 (-) True G17640
TU23767 lncRNA downstream 656951 9068035 ~ 9157978 (-) True G17600
TU23852 lncRNA upstream 28895 9847224 ~ 9847460 (-) True G17681
TU23861 lncRNA upstream 114586 9932915 ~ 9933135 (-) True G17690
TU23950 lncRNA upstream 134034 9952363 ~ 9954113 (-) True G17757
TU23971 lncRNA upstream 176823 9995152 ~ 9996395 (-) False mak
TU23974 lncRNA upstream 199484 10017813 ~ 10030981 (-) False G17770
XM_022680125.1 mRNA downstream 701024 9109014 ~ 9113905 (-) True bloc1s5
XM_022680116.1 mRNA downstream 730643 9071382 ~ 9084286 (-) True txndc5
XM_022680076.1 mRNA downstream 835311 8975458 ~ 8979618 (-) False LOC103047134
XM_022680199.1 mRNA upstream 176816 9995145 ~ 10009151 (-) True mak
XM_022680201.1 mRNA upstream 176816 9995145 ~ 10009151 (-) False mak
XM_022680205.1 mRNA upstream 176816 9995145 ~ 10009148 (-) False mak
XM_022680213.1 mRNA upstream 176816 9995145 ~ 10009144 (-) False mak
XM_022680217.1 mRNA upstream 176816 9995145 ~ 10009004 (-) False mak
TU23805 other downstream 252204 9562427 ~ 9562725 (-) True G17638
TU23350 other downstream 1807690 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 2826118 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 2826670 6988187 ~ 6988259 (-) True trnat-ugu_79
trnat-ugu_78 other downstream 2827222 6987635 ~ 6987707 (-) True trnat-ugu_78
TU24000 other upstream 428346 10246675 ~ 10247318 (-) True G17792
TU24180 other upstream 1197700 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 1197700 11016029 ~ 11080151 (-) False LOC103047439
TU24200 other upstream 1257909 11076238 ~ 11083799 (-) True LOC107197924
TU24378 other upstream 1866658 11684987 ~ 11685391 (-) True G18037

Expression Profile