RNA id: TU23850


Basic Information

Item Value
RNA id TU23850
length 288
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G17679
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9846014 ~ 9846301 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aattctgtgcggatataaaaatttgacaatataagcagaggttacactagctgctgcatttaaataatggaggtagaattacagtatattagaaaaaaacgtgattgaaagttgtctgttttgccattgaaacctatggggatgggtggagttacacagctttctgcagccgaacagcagggggcgcccgacctgtggtggcttcacttttaagagacgatgctctgtccagctatatacagtctatggtctgtataaaccatacactgtaaagttaagtttcagttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23810 lncRNA upstream 259142 9586658 ~ 9586872 (+) True G17643
TU23804 lncRNA upstream 283289 9562428 ~ 9562725 (+) True G17637
TU23799 lncRNA upstream 363306 9482402 ~ 9482708 (+) True G17632
TU23608 lncRNA upstream 630508 9203389 ~ 9215506 (+) True G17496
TU23581 lncRNA upstream 761572 9082088 ~ 9084442 (+) True G17474
TU23856 lncRNA downstream 41565 9887866 ~ 9888378 (+) True G17685
TU23881 lncRNA downstream 161489 10007790 ~ 10008795 (+) True G17709
TU23922 lncRNA downstream 400283 10246584 ~ 10247321 (+) True G17735
TU23926 lncRNA downstream 412717 10259018 ~ 10259526 (+) True G17739
TU23929 lncRNA downstream 423220 10269521 ~ 10270290 (+) True G17742
XM_007260062.3 mRNA upstream 9386 9820961 ~ 9836628 (+) True slc35b3
XM_022680180.1 mRNA upstream 9386 9821541 ~ 9836628 (+) False slc35b3
XM_022680169.1 mRNA upstream 363923 9311790 ~ 9482091 (+) True LOC103030214
XM_022680172.1 mRNA upstream 363923 9311790 ~ 9482091 (+) False LOC103030214
XM_007260059.3 mRNA upstream 713878 9121340 ~ 9132136 (+) False tfap2a
XM_007260063.3 mRNA downstream 91460 9937761 ~ 9954129 (+) True eef1e1
XM_022680191.1 mRNA downstream 134305 9980606 ~ 9989518 (+) True LOC103024812
XM_007260070.3 mRNA downstream 145105 9991406 ~ 9995040 (+) True tmem14c
XM_022668293.1 mRNA downstream 234290 10080591 ~ 10101407 (+) True sycp2l
XM_022668303.1 mRNA downstream 297783 10144084 ~ 10227332 (+) True LOC103027767
TU23538 other upstream 895855 8932707 ~ 8950159 (+) False G17443
TU23546 other upstream 924358 8916586 ~ 8921656 (+) True G17443
TU23528 other upstream 924358 8917975 ~ 8921656 (+) False G17443
TU23483 other upstream 1129227 8675619 ~ 8716787 (+) True G17414
trnat-ugu_6 other upstream 3178121 6667821 ~ 6667893 (+) True trnat-ugu_6
TU23933 other downstream 434923 10281224 ~ 10281976 (+) True G17745
TU24160 other downstream 1331607 11177908 ~ 11190080 (+) True G17904
XR_002651390.1 other downstream 2009305 11855606 ~ 11855851 (+) True LOC111194942
trnam-cau_3 other downstream 2444969 12291270 ~ 12291342 (+) True trnam-cau_3
TU24769 other downstream 3121262 12967563 ~ 12975106 (+) True G18332

Expression Profile