RNA id: TU23881


Basic Information

Item Value
RNA id TU23881
length 284
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G17709
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10007790 ~ 10008795 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttgtcaataTGCAAAATCATTCTCAAATTTACTATGCAAATCCAGAAATGATTTGTTACATTTACATTGGAGATTATCATcaatgaacaaaaacaactcATACCTGTCTTTCATCAGCTGGTAGAGGTTCTCCTTCATGTACTCAAAGACGAAGTACAAGTGGTCGTTTTCCCTGATGACTTCCTTTAGTTTTACAACGTTGGCATGATTTAGCTTCTTTAGtgaCTTCACTTCTCTCAGGTTCATACATTCCTCCCAGGAATAGAACTTCCTCTTCATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23856 lncRNA upstream 119412 9887866 ~ 9888378 (+) True G17685
TU23850 lncRNA upstream 161489 9846014 ~ 9846301 (+) True G17679
TU23810 lncRNA upstream 420918 9586658 ~ 9586872 (+) True G17643
TU23804 lncRNA upstream 445065 9562428 ~ 9562725 (+) True G17637
TU23799 lncRNA upstream 525082 9482402 ~ 9482708 (+) True G17632
TU23922 lncRNA downstream 237789 10246584 ~ 10247321 (+) True G17735
TU23926 lncRNA downstream 250223 10259018 ~ 10259526 (+) True G17739
TU23929 lncRNA downstream 260726 10269521 ~ 10270290 (+) True G17742
TU23942 lncRNA downstream 301270 10310065 ~ 10330395 (+) True G17751
TU24034 lncRNA downstream 373902 10382697 ~ 10382969 (+) True G17812
XM_007260070.3 mRNA upstream 12750 9991406 ~ 9995040 (+) True tmem14c
XM_022680191.1 mRNA upstream 18272 9980606 ~ 9989518 (+) True LOC103024812
XM_007260063.3 mRNA upstream 53661 9937761 ~ 9954129 (+) True eef1e1
XM_007260062.3 mRNA upstream 171162 9820961 ~ 9836628 (+) True slc35b3
XM_022680180.1 mRNA upstream 171162 9821541 ~ 9836628 (+) False slc35b3
XM_022668293.1 mRNA downstream 71796 10080591 ~ 10101407 (+) True sycp2l
XM_022668303.1 mRNA downstream 135289 10144084 ~ 10227332 (+) True LOC103027767
XM_007260078.3 mRNA downstream 331699 10340494 ~ 10350048 (+) True LOC103028717
XM_007260079.3 mRNA downstream 331699 10340494 ~ 10350048 (+) False LOC103028717
XM_022680284.1 mRNA downstream 508626 10517421 ~ 10805698 (+) True LOC103044085
TU23538 other upstream 1057631 8932707 ~ 8950159 (+) False G17443
TU23546 other upstream 1086134 8916586 ~ 8921656 (+) True G17443
TU23528 other upstream 1086134 8917975 ~ 8921656 (+) False G17443
TU23483 other upstream 1291003 8675619 ~ 8716787 (+) True G17414
trnat-ugu_6 other upstream 3339897 6667821 ~ 6667893 (+) True trnat-ugu_6
TU23933 other downstream 272429 10281224 ~ 10281976 (+) True G17745
TU24160 other downstream 1169113 11177908 ~ 11190080 (+) True G17904
XR_002651390.1 other downstream 1846811 11855606 ~ 11855851 (+) True LOC111194942
trnam-cau_3 other downstream 2282475 12291270 ~ 12291342 (+) True trnam-cau_3
TU24769 other downstream 2958768 12967563 ~ 12975106 (+) True G18332

Expression Profile