RNA id: TU23933



Basic Information


Item Value
RNA id TU23933
length 753
RNA type TUCP
GC content 0.48
exon number 1
gene id G17745
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10281224 ~ 10281976 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TTataagccatttctcaattgGCGTAGAGATGGGCGCCAGGGGCTACCTCTGACAGTGGGAGAGATGATCAATCTCATTGGACAGCTACCGCCCGCTTTAAGCTGGGCAGCCCCCAGCCAATTAGGTGCTGTCCCGCCACAGCCTTCCTGCTTCATTGGGTGCATGAAGCTAAGGGATCATCCTGACAAGTGGGCTGTAAAACCGTGCACCAagcaaaagaacaaaaaagcaaaaaagaactTCAGCATTACGATTAGGATGCTGGAATATCAGGACCATGACACCCGGGCTAACTGACAACCCAACAAAGATAAATGATGCTCGTAAGACTGCAGTGATCAACAACATACTCATGAAACTTCAAGTAGACATCTTGACTCTTCAGGAAACCAGACTCATCTCATCAGGATCGTTGCGGGAAAGAGACTATACCTTTTTCTGGCAAGGGAAGGCTCCTGGCGAACCTAGAGAACATGGAGTTGGCTTTGCAGTCAAGAACACTCTGCTTGGAGCAATGTACCACTACAGGGGTTCAGAGAGAATCCTAACCCTCTGCCTAAACACAACCACGGGACCTGTCCACTTGGTGAGTGTGTATGCACCAACACTCAGCTCCTCCCAAGAAATCAAGGACAAGTTCTATGATGACCTTGAACTAACCATAAAAAACATCCCCAAGGAGGAACAGCTGTATTTGCTTGGTGACTTCAATGCTAGAGTTGGTGCAGACCACGATTCCTGGTCATCTTGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23929 lncRNA upstream 10934 10269521 ~ 10270290 (+) True G17742
TU23926 lncRNA upstream 21698 10259018 ~ 10259526 (+) True G17739
TU23922 lncRNA upstream 33903 10246584 ~ 10247321 (+) True G17735
TU23881 lncRNA upstream 272429 10007790 ~ 10008795 (+) True G17709
TU23856 lncRNA upstream 392846 9887866 ~ 9888378 (+) True G17685
TU23942 lncRNA downstream 28089 10310065 ~ 10330395 (+) True G17751
TU24034 lncRNA downstream 100721 10382697 ~ 10382969 (+) True G17812
TU24043 lncRNA downstream 130943 10412919 ~ 10413158 (+) True G17821
TU24050 lncRNA downstream 148924 10430900 ~ 10431296 (+) True G17828
TU24054 lncRNA downstream 177806 10459782 ~ 10460123 (+) True G17832
XM_022668303.1 mRNA upstream 53892 10144084 ~ 10227332 (+) True LOC103027767
XM_022668293.1 mRNA upstream 179817 10080591 ~ 10101407 (+) True sycp2l
XM_007260070.3 mRNA upstream 286184 9991406 ~ 9995040 (+) True tmem14c
XM_022680191.1 mRNA upstream 291706 9980606 ~ 9989518 (+) True LOC103024812
XM_007260063.3 mRNA upstream 327095 9937761 ~ 9954129 (+) True eef1e1
XM_007260078.3 mRNA downstream 58518 10340494 ~ 10350048 (+) True LOC103028717
XM_007260079.3 mRNA downstream 58518 10340494 ~ 10350048 (+) False LOC103028717
XM_022680284.1 mRNA downstream 235445 10517421 ~ 10805698 (+) True LOC103044085
XM_007260369.3 mRNA downstream 1106948 11388924 ~ 11394347 (+) True c3h11orf54
XM_007260370.3 mRNA downstream 1114911 11396887 ~ 11401496 (+) True spata22
TU23538 other upstream 1331065 8932707 ~ 8950159 (+) False G17443
TU23546 other upstream 1359568 8916586 ~ 8921656 (+) True G17443
TU23528 other upstream 1359568 8917975 ~ 8921656 (+) False G17443
TU23483 other upstream 1564437 8675619 ~ 8716787 (+) True G17414
trnat-ugu_6 other upstream 3613331 6667821 ~ 6667893 (+) True trnat-ugu_6
TU24160 other downstream 895932 11177908 ~ 11190080 (+) True G17904
XR_002651390.1 other downstream 1573630 11855606 ~ 11855851 (+) True LOC111194942
trnam-cau_3 other downstream 2009294 12291270 ~ 12291342 (+) True trnam-cau_3
TU24769 other downstream 2685587 12967563 ~ 12975106 (+) True G18332
TU24850 other downstream 2762855 13044831 ~ 13074453 (+) True G18386

Expression Profile