RNA id: XM_022680217.1


Basic Information

Item Value
RNA id XM_022680217.1
length 3443
RNA type mRNA
GC content 0.43
exon number 12
gene id mak
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9995145 ~ 10009151 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTTTCCACCTGGCTTACCAATTTTTCAATTTCCTTGACTATCAAAGATTAGCTCAGACCATGCTTAAAATCAGTTACCAGCAAAAGGGATGTTAGTTTTTTGACTGAACTCTTCCTCAAACAACAGGTTAAGCTTTGTTGTTGCCGATGAAACCTTGGAGATCAGGCCATTGTTCAGACTCTGTGTAATCTCTGCTAATGTGTTTCACAGAATGAAGAGGAAGTTCTATTCCTGGGAGGAATGTATGAACCTGAGAGAAGTGAAGtcaCTAAAGAAGCTAAATCATGCCAACGTTGTAAAACTAAAGGAAGTCATCAGGGAAAACGACCACTTGTACTTCGTCTTTGAGTACATGAAGGAGAACCTCTACCAGCTGATGAAAGACAGGGAAAACAAGATGTTCACTGAAAATGAGATAAGGAACATCATGTTTCAGGTGCTATCTGGTTTGGCATTTGTGCACAAGCATGGGTTTTTTCATCGGGATATGAAACCAGAAAATCTGCTGTGCATGGGTCCTGAATTGGTGAAAATAGCAGACTTTGGTCTGGCCAGAGAGACTCGCTCACGGCCTCCCTACACAGACTATGTCTCCACCAGATGGTATCGAGCTCCAGAGGTCCTTCTGAGATCATCTATGTACAGTTCACCGATAGACATGTGGGCAGTGGGCTGTATCATGGCAGAGCTCTACACCTTACGACCTCTTTTCCCTGGCAACAGCGAGGTTGATGAGATCTTCAAAATCTGTCAAGTTCTTGGTACAGTCAAGAAGACAGATTGGCCAGAGGGCTATCAGCTGGCTGCAGCAATGAACTTCCGTTTCCCTCAGTGTGTGCCCACACCTCTGAAGACCCTCATCCCCAATGCCAGCAATGAGGCATTAACGTTAATGAAAGACCTCCTGCAGTGGGACCCCAAAAAGAGGCCAACAGCTGTTCAGGCATTGCGGTACCCCTACTTCCAAGTGGGCCAGGTTCTCGGCCCTCGGACACAGACTCCTGACCTACGCAAGCCACAGATGAAACCAGCACAGCCCACTGAGCCCAAACCTGAACTGCAGTCTGCCTCAGAACCTGCATTACGCTCTCAGGCCAAGGCCCAGGGGAGAAGCTTCCATCAGCCACTGCAACAGATCCCCCTGCCCCAGGCAGAATGCCAATCTGAGCCTCTACCACTTAACACACAAAAGAGGCCTGTGGGAAATGAGAATAGCTTGGCTGGGCTGAAAAGTGGAAGAAGACGCTGGGGGCAGACAAAGCCCACTGACAGCTGGGACGAATCAGATCACTCAGACACTGCTGCGTCTATTTCCAAGAAACCCAGCATGGGCATAGAAGAGGACAAACCCAACAAGGAGTTCATTTCTCAgcCAAAGGAACAAAAACCTCTTTATACTTTTACCACTGTGACAAAACTACCCAGCAACATCAAAACGAATCAGTCAGACTCCAATCTTCAAAACACCTCttcagccagacagcattaCCTCCGTCAGTCAAGATACCTTCCGGGCCTGATTAGTAAGAGCACACCGTCCGCTGCGGAGAAGGAGTCTCAGAGAGAGAACATATCTAACCTATCCAACAAATCACTCGCACCTGTTGGACTAGCACCAGTTACCCGAGTCAGTCCAGGAAACTTTATCAGCACCACATACAATCTGTCTGGAGGATATATCCCATCTTTCCAGAAGAAAGAAGTTGGGTCAGTTGGCCAGAGGATCCAGCTTGCACCACTTGGAAATCAGCATGCACATTTTGATGGGTGGAAAAGGAGAGCAGAGAGAACTCAGGTCAAAGGACAAAGTTACTCAGCCTTGGGGAAAAACTCTGCAAACTTGCTCCCTCGTGCGGCTCCTGTCCAACCCGTCCACGGTCGAGTGGACTGGGCAGCGAAGTACGGAAACCACCGGTAGCACATCTTCAAATTAGCTCGAGTGGTTGGAAGGGTACCTACGCGGACTGAAGCCGGGCCTTGTTACAGCTCTgctaattactgagtaaaatctGATGCCGTTGAGGAGCTGCTAAATCACTGTGCAAAGTTTCTTAGTGGGACATGCGGGATGTCCTCACACCACGACACCGTGATATCCAGGTGAAATGACAATCTCACAAGTTCATGCTTTAATTATACAGTGGGCTTTATAAGAGTCCTAAGGGCCTCTGCTAATTgataacaccactgactgaatcTTCATTAATGGATGTGTCTGTGGTTAGATGGTTAGGGCAGATTTTGGGCTTTTTATGGTCCGGAGCCCAATGTGCTGTGATTAGTTGAGCTTATAGCCATGAAAGTTAAAGATGTTACAATTTCTTAAGGTTAGGACAAAACGGTTTTAAATAATAGTGTTTGAaggattttgtatttattatcttttcctttttttgctacatatgactgttttttgtagGAAATGGTTcacttttttgtaataattaagATTCGAGATAAAAGCtgtaaaataatactttttgtttgttctttcACTGAATGCAAAAACCTTACTTCAGAATTTATAAAACACATCCATTTCAACCATTAAAATACATATCAACACAGACTAGGGCAGCACAAACATTACAATACAAAACTTTTAATGgcacagtattatttattttactcctgttaaaatctaaaaaattcCTCACTTTGTTGTAGCGCAATGTAAAACATGTCAAAAATTAtgagacaggaactagtatcccatgttccatgacttttgccatgttttatGAAAGCTTAcagacactgcactgacctgcagtaTATGTGTTTAgggcctcctgcattaaatgtgtggctgtgatttctgccagtAGGTTCTATGTTAGCACTGATAATTCTATCCAGAATCTGCTGGgcacgatcattaccactcagTGTTCTGTCCActttgggtggtaatgcctttttgGTCATATTCCCATTACACGCATGAtgctgtggatcaaggaatgttaaatgaccagagaacagaaataaatatctCATCCATCTGGCATCCACCATCAGGCTGCACTccaataaaaattataatcGCTACAATAGTTAACGTTACTTTGACATAAGCACAATGGTCAGTGTTCAGCCACTGACAACACCTCACAGCATATACAGGTGTAGGTTTTCCCAAGtcgtcccctgaggtaacatttCACGATCAATTTACACTGCTATCCCAGGACTTTTGGTACATCAGTTTCCCCCCCTAATATAATGCAGCCTTAGCATAGATTCACTCTTAATGCCACTGAACCatcatagtttttttgtttcataagagtgttaattaaataacaaaCTGTTTCCTTTCACATGTGTCTATATTCAACCAATACTGAATTCACATTTGTGTCATAACTAATTGTATAGAAATGTGGATCATCAAAATACATGATTTGTAGCTAAAATCAATAAACAGACAGTTTTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23950 lncRNA downstream 41032 9952363 ~ 9954113 (-) True G17757
TU23861 lncRNA downstream 62010 9932915 ~ 9933135 (-) True G17690
TU23852 lncRNA downstream 147685 9847224 ~ 9847460 (-) True G17681
TU23831 lncRNA downstream 176816 9814929 ~ 9818329 (-) True G17663
TU23829 lncRNA downstream 180462 9813711 ~ 9814683 (-) True G17661
TU23974 lncRNA upstream 8809 10017813 ~ 10030981 (-) False G17770
TU23975 lncRNA upstream 20712 10029716 ~ 10030981 (-) True G17770
TU23987 lncRNA upstream 84189 10093193 ~ 10097725 (-) True G17780
TU23989 lncRNA upstream 124285 10133289 ~ 10133738 (-) True G17782
TU23999 lncRNA upstream 250931 10259935 ~ 10260287 (-) True G17791
XM_022680125.1 mRNA downstream 881240 9109014 ~ 9113905 (-) True bloc1s5
XM_022680116.1 mRNA downstream 910859 9071382 ~ 9084286 (-) True txndc5
XM_022680076.1 mRNA downstream 1015527 8975458 ~ 8979618 (-) False LOC103047134
XM_007260072.3 mRNA upstream 62074 10071078 ~ 10078582 (-) True gcm2
XM_007260074.3 mRNA upstream 94175 10103179 ~ 10118608 (-) True elovl2
XM_022680257.1 mRNA upstream 222509 10231513 ~ 10257873 (-) True mppe1
XM_007260076.3 mRNA upstream 258654 10267658 ~ 10278333 (-) True LOC103028097
XM_022680282.1 mRNA upstream 320086 10329090 ~ 10340189 (-) False LOC103029242
TU23805 other downstream 432420 9562427 ~ 9562725 (-) True G17638
TU23350 other downstream 1987906 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 3006334 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 3006886 6988187 ~ 6988259 (-) True trnat-ugu_79
trnat-ugu_78 other downstream 3007438 6987635 ~ 6987707 (-) True trnat-ugu_78
TU24000 other upstream 237671 10246675 ~ 10247318 (-) True G17792
TU24180 other upstream 1007025 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 1007025 11016029 ~ 11080151 (-) False LOC103047439
TU24200 other upstream 1067234 11076238 ~ 11083799 (-) True LOC107197924
TU24378 other upstream 1675983 11684987 ~ 11685391 (-) True G18037

Expression Profile