RNA id: TU24010


Basic Information

Item Value
RNA id TU24010
length 2198
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G17799
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10293586 ~ 10298657 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attacatttactaTATACAActtgaccttttttttattaggaagttaaattaattcatttgaattatttttttaattcctttaaataaatcaaaagccACAGCCATACATTAATTATCAATAAATTCTATGAAAATGAACGCGGGttatttttgacccatgttgtggAGTGGTAGTGATGATAAAAAGGGTTTACATTCAAAAAGTCCCTGAACCGGCGGCGGTTTTTCCAACCAATGAGAATGCAGAAACAAGCGGCATTAAGAATTTAATTGGTTAAATCCTGTTGCCACTTCTGATTGGCTGGGGCCTTTTGGCAGCTTTGTTGCAGTGAAAATCTCCGCGTTCGAGCAGGGACCGCTCCGCGAGCACACGCGCGCTCTCTCAAAACATTAAGAACAGACAGATATAGACGAGGATGATTTATCTGAGAGCTCGCGCGCAGTTTCGTACAGGAGGAGAGTTaatgtgagagagagcatgGTCCACATGTGAAAGTCCTTCATTCCAGGACCTAAAAAGCACGTTGAATCCTAACATTGCGTACAACTGCAGACAAGTTCCTTATAACAGAGTTGAAGGCTGCATTTCTGATCCAGAGATTCCATGTGTTGACTGCCTATGAGAGTCCACTCAGCATTTGATGAAGACTCAGGACCCCCAGGCCAGTCTCAAGTGTCACAGAAGAAGAtcatctgtaaataaaaagacacTCTACATCAAACAGACCTTTACTAGAGAAAACTTTAAATCAGGGCAATGTGGTCAGCAGCAGAAGGGCATGACTAAGTTCAGACTATTGGGCTATAGTCACAAATGAGGGATAAAAACATACTCACTTTCAGAATACTATATATGGACACACAAataacttttactcaaacaacTTAAATGTTGTGCTTTATATGGACAAATGTATTGACACATCTCTTAAACATtgaatttagttttatttagtccCATTTAAGtcacatatatataaactaagAAACTTAGCTATGCAGTctgcctttaaaaaaagcaaatgtgtAGCCAGTttaaaacagaatatttttttccttttttttaatcagcccTCATTTTGGATTTAGTTAGCCCTGCTGACTGCAGTTGTGCCCCTGAACACTAGCGCAACAATCATGCAAGAGAATATCTGCACTGACTTTACTTACAGTAAATGTGACTGTCGTTTGTTTGTATCTTGTGTTAATTCTGAAAGTACTGTAAAAGCAACATAATATAGTCTTAAATTGCAAAATTAGTCGTTTTTATATAGTACAATTATAAAGTCTGAGCCAGCttctttttaaaacgttataaaAATTTTGTAtaacctattattattattactacagaaaaatgcattttaaaacgGACATATATTAAgacaattatataaaacaatatagaaACCTAGAAACCTTCACTGCCAAtcagaacaaaaataaatgcatagAGTTGAAAGAATAGAGCAATAAAGTACAtaaaatgtttctgtttttttacaatttgcCATTATTTGGGCagtcattttaattatatttgtattcTTTTATAATACATTAGTTATTTTTGTAACAAtgaaataataatcattttacaGGTGAGAATGACATCATTGGTTTAGTAACAGAGATAATGGTGAATATATACACTGTGTTTGTTATTGTGGGCATTTGTGTCTTTTAAAGGCGTCTAATGTGACAGTAGATCTGACTAAAAAACCTTGTAAAGCCTTCAACTGTGAAAGAGCACTGcactgaaatcaatattttgtggaataaccctgattttaaacCACAGTTTTCCTCTtgacatgttcttctccaccagtcttacacactgcatttGGAAGGCTTTgtctctcctggtgcaaaaattcaagcagttcagattggtttgatggcttgtgatcatcaatctttctcttgattatattccagaggttttcaatttggtaaaataaaattaaaattcatcatttttaagtggtctcttatttttttcccagagctgtatgttgttgtttttttctttggattTTGGCCAGAATGTTCTTTTATTGTAATCCCAGGTAATTGAATATATGCTAATATGCTGAGAagtttgtttttatgtctttgtttGAAATGTTGtttgaataatatttttttaacatgctgtgtgttgagtttaacctgtaaataaagaatattttcc

Function

GO:

id name namespace
GO:0016997 alpha-sialidase activity molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism
ko00511 Other glycan degradation
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24005 lncRNA downstream 22962 10269491 ~ 10270624 (-) True G17796
TU23999 lncRNA downstream 33299 10259935 ~ 10260287 (-) True G17791
TU23989 lncRNA downstream 159848 10133289 ~ 10133738 (-) True G17782
TU23987 lncRNA downstream 195861 10093193 ~ 10097725 (-) True G17780
TU23974 lncRNA downstream 262605 10017813 ~ 10030981 (-) False G17770
TU24030 lncRNA upstream 44139 10342796 ~ 10343263 (-) True G17808
TU24080 lncRNA upstream 241821 10540478 ~ 10542381 (-) True G17845
TU24078 lncRNA upstream 243848 10542505 ~ 10543607 (-) False G17845
TU24103 lncRNA upstream 555969 10854626 ~ 10855071 (-) True G17859
TU24186 lncRNA upstream 751599 11050256 ~ 11060895 (-) True G17921
XM_007260076.3 mRNA downstream 15253 10267658 ~ 10278333 (-) True LOC103028097
XM_022680257.1 mRNA downstream 35713 10231513 ~ 10257873 (-) True mppe1
XM_007260074.3 mRNA downstream 174978 10103179 ~ 10118608 (-) True elovl2
XM_007260072.3 mRNA downstream 215004 10071078 ~ 10078582 (-) True gcm2
XM_022680217.1 mRNA downstream 284582 9995145 ~ 10009004 (-) False mak
XM_022680282.1 mRNA upstream 30433 10329090 ~ 10340189 (-) False LOC103029242
XM_015608547.2 mRNA upstream 30433 10329090 ~ 10336901 (-) True LOC103029242
XM_022680293.1 mRNA upstream 586196 10884853 ~ 10952099 (-) True LOC103044364
XM_022680295.1 mRNA upstream 588447 10887104 ~ 10952098 (-) False LOC103044364
XM_022680318.1 mRNA upstream 734519 11033176 ~ 11080184 (-) False LOC103047439
TU24000 other downstream 46268 10246675 ~ 10247318 (-) True G17792
TU23805 other downstream 730861 9562427 ~ 9562725 (-) True G17638
TU23350 other downstream 2286347 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 3304775 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 3305327 6988187 ~ 6988259 (-) True trnat-ugu_79
TU24180 other upstream 717372 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 717372 11016029 ~ 11080151 (-) False LOC103047439
TU24200 other upstream 777581 11076238 ~ 11083799 (-) True LOC107197924
TU24378 other upstream 1386330 11684987 ~ 11685391 (-) True G18037
trnam-cau other upstream 1991026 12289683 ~ 12289755 (-) True trnam-cau

Expression Profile