RNA id: TU24078


Basic Information

Item Value
RNA id TU24078
length 907
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G17845
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10540478 ~ 10543607 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atttggttaaacgctgaaatctaaaaacatttggttaaacgctgaaatctaaaaacgtttggttaaacgctgaaatctaaaaacgtttggttaaacgctgaaatctaaaaacgtttggttaaacgctgaaatctaaaaacgtttggttaaacgctgaaatctaaaaacatttggttaaacgctgaaatctaaaaacatttggttaaacgctgaaatctaaaaacgtttgattaaacgctgaaatctaaaaacgtttggttaaacgctgaaatctaaaaacatttggttaaacgctgaaatctaaaaacgtttgattaaacgctgaaatctaaaaacgtttggttaaacgctgaaatctaaaaacacttgtttaaatgctgaaatcgtaaaacttttggttaaacttttgattgctaatgtgttgctaggcagttgctatcatttctgaaaaggttgctaagctgttgctaggcagttgctaatgttttccaggtggttgctaagctattgctaactggttgctaggcaattgcTAACATATaccaggtagttgctaaggtgttgctaggtggttgctagggtgttgctaggttgttgctaaggtgttgctatggtatctggggtggttgctaagatgttgctacgtggttgctagggtgttgctatggtatccggggtggttgctaaggtgtcgctaggtggttgctagggtgttgctaggtggttgctaaggtgttgctatggtatctggggtggttgctaaggtgtttctaggtggttgctaggtggttgctaaggtgttgctatggtatccggggtggttgctaagatgttgctaggtggttgctaaggtggttgctaaggtggttgctaaggtgttgctatggtatctggggtggttgctaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24080 lncRNA downstream 124 10540478 ~ 10542381 (-) True G17845
TU24030 lncRNA downstream 199242 10342796 ~ 10343263 (-) True G17808
TU24010 lncRNA downstream 243848 10293586 ~ 10298657 (-) True G17799
TU24005 lncRNA downstream 271881 10269491 ~ 10270624 (-) True G17796
TU23999 lncRNA downstream 282218 10259935 ~ 10260287 (-) True G17791
TU24103 lncRNA upstream 311019 10854626 ~ 10855071 (-) True G17859
TU24186 lncRNA upstream 506649 11050256 ~ 11060895 (-) True G17921
TU24182 lncRNA upstream 528522 11072129 ~ 11080151 (-) True LOC103047439
TU24195 lncRNA upstream 541876 11085483 ~ 11090989 (-) False abr
TU24203 lncRNA upstream 602798 11146405 ~ 11147408 (-) True G17929
XM_022680282.1 mRNA downstream 202316 10329090 ~ 10340189 (-) False LOC103029242
XM_015608547.2 mRNA downstream 205604 10329090 ~ 10336901 (-) True LOC103029242
XM_007260076.3 mRNA downstream 264172 10267658 ~ 10278333 (-) True LOC103028097
XM_022680257.1 mRNA downstream 284632 10231513 ~ 10257873 (-) True mppe1
XM_007260074.3 mRNA downstream 423897 10103179 ~ 10118608 (-) True elovl2
XM_022680293.1 mRNA upstream 341246 10884853 ~ 10952099 (-) True LOC103044364
XM_022680295.1 mRNA upstream 343497 10887104 ~ 10952098 (-) False LOC103044364
XM_022680318.1 mRNA upstream 489569 11033176 ~ 11080184 (-) False LOC103047439
XM_022680315.1 mRNA upstream 489571 11033178 ~ 11080162 (-) False LOC103047439
XM_022680304.1 mRNA upstream 489574 11033181 ~ 11080162 (-) False LOC103047439
TU24000 other downstream 295187 10246675 ~ 10247318 (-) True G17792
TU23805 other downstream 979780 9562427 ~ 9562725 (-) True G17638
TU23350 other downstream 2535266 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 3553694 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 3554246 6988187 ~ 6988259 (-) True trnat-ugu_79
TU24180 other upstream 472422 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 472422 11016029 ~ 11080151 (-) False LOC103047439
TU24200 other upstream 532631 11076238 ~ 11083799 (-) True LOC107197924
TU24378 other upstream 1141380 11684987 ~ 11685391 (-) True G18037
trnam-cau other upstream 1746076 12289683 ~ 12289755 (-) True trnam-cau

Expression Profile