RNA id: TU24080


Basic Information

Item Value
RNA id TU24080
length 1113
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G17845
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10540478 ~ 10543607 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggtggttgctaagatgttgctaggtggttgctaagctgttgctaggcagttgctaacgttttccaggtggttgctaaggtgttggtaagtggttgctaggctgttgctatcatttctaaagtggttgctaggcagttgctatcgtttctaaggtggttgctaagtggttgctaacgttttcctagtggttgttaaggtgttgctaagtggttgctaggcagttgctaacgttttccaggtgtttgctaagtggttgctaactggttgctaggcagttgctataatttctaaagtggttgctaagttgttgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaaggtgttgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaaacagttaataggtggttgcaaagccctggctggggtgccggggtgtccaaacttttgactgatagctgctccatacagcagctcctccatacactcacagtactggaggagcaggggagagaaggggttccgtgcgcagagctgctcgtgtgtgagatggaactctgggccccccattcatttctatgggaAAACTTCGTACGACATTTGTACGAAAACCGTACGTCGTATCACTTCGCAACCTATTATCGCTAAtgtttccaggtggttgctaagtggttgctaactggttgctaggcagttgctaacgttttccaggtggttgctaaggtgttgctaagtggttgctaggcagttgctaacgttttccaggtggttgctacacAGTTAATAGATGGTTGCTAAACCCTGGCTGgggtgccggggtgtccaaacttttgactgatagctgctccatacagcagctcctccatacactcacagtactggaggagcaggggagagaaggggttccgtgcgcagagctgctCGTGTGCGAGTTAGAACTCtgggccccccattcatttcAATGGGAAAACTTCGTACGACATTTGTACGAAAACCGTACGACGTATCGTCGAAACGTTAAAAATTTCGGAAAGAAAGCGGTAAGTTCTATAGACCGTCCGATTTTTGTCTTTGTATGTCAAAAATTGTTACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24030 lncRNA downstream 197215 10342796 ~ 10343263 (-) True G17808
TU24010 lncRNA downstream 241821 10293586 ~ 10298657 (-) True G17799
TU24005 lncRNA downstream 269854 10269491 ~ 10270624 (-) True G17796
TU23999 lncRNA downstream 280191 10259935 ~ 10260287 (-) True G17791
TU23989 lncRNA downstream 406740 10133289 ~ 10133738 (-) True G17782
TU24078 lncRNA upstream 124 10542505 ~ 10543607 (-) False G17845
TU24103 lncRNA upstream 312245 10854626 ~ 10855071 (-) True G17859
TU24186 lncRNA upstream 507875 11050256 ~ 11060895 (-) True G17921
TU24182 lncRNA upstream 529748 11072129 ~ 11080151 (-) True LOC103047439
TU24195 lncRNA upstream 543102 11085483 ~ 11090989 (-) False abr
XM_022680282.1 mRNA downstream 200289 10329090 ~ 10340189 (-) False LOC103029242
XM_015608547.2 mRNA downstream 203577 10329090 ~ 10336901 (-) True LOC103029242
XM_007260076.3 mRNA downstream 262145 10267658 ~ 10278333 (-) True LOC103028097
XM_022680257.1 mRNA downstream 282605 10231513 ~ 10257873 (-) True mppe1
XM_007260074.3 mRNA downstream 421870 10103179 ~ 10118608 (-) True elovl2
XM_022680293.1 mRNA upstream 342472 10884853 ~ 10952099 (-) True LOC103044364
XM_022680295.1 mRNA upstream 344723 10887104 ~ 10952098 (-) False LOC103044364
XM_022680318.1 mRNA upstream 490795 11033176 ~ 11080184 (-) False LOC103047439
XM_022680315.1 mRNA upstream 490797 11033178 ~ 11080162 (-) False LOC103047439
XM_022680304.1 mRNA upstream 490800 11033181 ~ 11080162 (-) False LOC103047439
TU24000 other downstream 293160 10246675 ~ 10247318 (-) True G17792
TU23805 other downstream 977753 9562427 ~ 9562725 (-) True G17638
TU23350 other downstream 2533239 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 3551667 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 3552219 6988187 ~ 6988259 (-) True trnat-ugu_79
TU24180 other upstream 473648 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 473648 11016029 ~ 11080151 (-) False LOC103047439
TU24200 other upstream 533857 11076238 ~ 11083799 (-) True LOC107197924
TU24378 other upstream 1142606 11684987 ~ 11685391 (-) True G18037
trnam-cau other upstream 1747302 12289683 ~ 12289755 (-) True trnam-cau

Expression Profile