RNA id: TU24172


Basic Information

Item Value
RNA id TU24172
length 371
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G17913
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11272708 ~ 11310079 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcagactattttcccacacttcactcctcgcgcccgttttgtccacaagtcgcggacgagagacatctgttattttagccgtcgccattctacactcgctgctgctctgctggcttgcgcgtgaatcgattcatttgttcagaacactaagtttatctgaatcctgccacaccgactgctgcggtgtgaatcagttttcttatgaactgaatcaaatcgcgcctactaatttgactcatttgaagctagtgactgggctatatacagtatcgaaagcatcgaacgctaaagaaccgaatcgtttgtgatgacgtagtatcgaaaaagaatcgaaccttcggtacaccgtgcaactctaTGTTCTACACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24165 lncRNA upstream 29514 11205249 ~ 11243194 (+) True G17907
TU24143 lncRNA upstream 188539 11083918 ~ 11084169 (+) True G17891
TU24128 lncRNA upstream 211868 11051628 ~ 11060840 (+) True G17880
TU24130 lncRNA upstream 211868 11051628 ~ 11060840 (+) False G17880
TU24129 lncRNA upstream 211868 11051979 ~ 11060840 (+) False G17880
TU24213 lncRNA downstream 42514 11352593 ~ 11353198 (+) True G17937
TU24259 lncRNA downstream 257685 11567764 ~ 11569542 (+) True G17965
TU24260 lncRNA downstream 257685 11567764 ~ 11569542 (+) False G17965
TU24269 lncRNA downstream 280225 11590304 ~ 11595495 (+) True G17973
TU24270 lncRNA downstream 280225 11590304 ~ 11591770 (+) False G17973
XM_022680284.1 mRNA upstream 467010 10517421 ~ 10805698 (+) True LOC103044085
XM_007260078.3 mRNA upstream 922660 10340494 ~ 10350048 (+) True LOC103028717
XM_007260079.3 mRNA upstream 922660 10340494 ~ 10350048 (+) False LOC103028717
XM_022668303.1 mRNA upstream 1045376 10144084 ~ 10227332 (+) True LOC103027767
XM_022668293.1 mRNA upstream 1171301 10080591 ~ 10101407 (+) True sycp2l
XM_007260369.3 mRNA downstream 78845 11388924 ~ 11394347 (+) True c3h11orf54
XM_007260370.3 mRNA downstream 86808 11396887 ~ 11401496 (+) True spata22
XM_022680359.1 mRNA downstream 86808 11396887 ~ 11401202 (+) False spata22
XM_022680353.1 mRNA downstream 86808 11396887 ~ 11401202 (+) False spata22
XM_022680366.1 mRNA downstream 86808 11396887 ~ 11401202 (+) False spata22
TU24160 other upstream 82628 11177908 ~ 11190080 (+) True G17904
TU23933 other upstream 990732 10281224 ~ 10281976 (+) True G17745
TU23538 other upstream 2322549 8932707 ~ 8950159 (+) False G17443
TU23546 other upstream 2351052 8916586 ~ 8921656 (+) True G17443
XR_002651390.1 other downstream 545527 11855606 ~ 11855851 (+) True LOC111194942
trnam-cau_3 other downstream 981191 12291270 ~ 12291342 (+) True trnam-cau_3
TU24769 other downstream 1657484 12967563 ~ 12975106 (+) True G18332
TU24850 other downstream 1734752 13044831 ~ 13074453 (+) True G18386
TU24886 other downstream 1904569 13214648 ~ 13224093 (+) False G18413

Expression Profile